Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01868 ATGGAGTTGGCTTTGAGCTTAGGCCACACAAACAATCCTTCAATGGGGTTTTCCATGGCACTGCCACACGAAACAAGAGCTTCCTCAGATCCACCCCTTCAGCTCCACCACCTTCTTCCTTCAACACCAGTTCTTCCTTCTCCACGCCTTCCCATTCCATGGCTCTCCCATGCATTAGGCATGGAAGAGATTCCGGTGAGGGTGCTTGATGACACCGACGACGGTGCTGCAGTTTCATCCCCCAACAACAGTGCAGTGTCGTCATATTTTTGCAGAAACAGTAGAAAGTTCTGTGAGGGTGATAGCGAAGAAGACGAAAATGGGTCAACGAGGAAGAAACTCAGACTCTCCAAAACACAATCAGCTTTTCTGGAAGACAGCTTCAAAGAACACACCACTCTCAATCCCAAACAAAAACTTGTTCTTGCGAAAGAGTTAAATCTGCGTCCGCGTCAAGTAGAGGTTTGGTTTCAGAACAGAAGGGCAAGAACAAAGTTGAAGCAGACCGAGGTGGACTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTGTCAGAAGAGAATAAGAGATTACAGAAGGAACTGCAAGAACTGAGGGCTTTGAAAACTTGTGAACCGTTTTTCATGCAGCTTCCGGCTACCACCCTCACCATGTGTCCCTCCTGTGAACGCGTTGCCACCACCACCTCCACCTCCGCCGCCGCCGCTTCCGCCACCAACAATCGTAGTGTTTCTCTGAACAAGCCCAGAATATTGTCAGGCCCACACGCAGCAGGCCCACCTGGCCCATCAGAGTGCTTCTTCTGA 804 0.4988 MELALSLGHTNNPSMGFSMALPHETRASSDPPLQLHHLLPSTPVLPSPRLPIPWLSHALGMEEIPVRVLDDTDDGAAVSSPNNSAVSSYFCRNSRKFCEGDSEEDENGSTRKKLRLSKTQSAFLEDSFKEHTTLNPKQKLVLAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLSEENKRLQKELQELRALKTCEPFFMQLPATTLTMCPSCERVATTTSTSAAAASATNNRSVSLNKPRILSGPHAAGPPGPSECFF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01868 267 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 30 242 - -
Viun1g01868 267 Coils Coil 173 200 - -
Viun1g01868 267 ProSitePatterns 'Homeobox' domain signature. 142 165 IPR017970 GO:0000981|GO:0006355
Viun1g01868 267 FunFam Homeobox-leucine zipper protein HAT22 115 161 - -
Viun1g01868 267 SMART halz 167 210 IPR003106 GO:0006355|GO:0043565
Viun1g01868 267 Pfam Homeobox associated leucine zipper 167 201 IPR003106 GO:0006355|GO:0043565
Viun1g01868 267 Pfam Homeodomain 111 165 IPR001356 GO:0003677
Viun1g01868 267 SUPERFAMILY Homeodomain-like 102 168 IPR009057 -
Viun1g01868 267 MobiDBLite consensus disorder prediction 245 267 - -
Viun1g01868 267 SMART HOX_1 109 171 IPR001356 GO:0003677
Viun1g01868 267 CDD bZIP 160 199 - -
Viun1g01868 267 Gene3D - 115 165 - -
Viun1g01868 267 ProSiteProfiles 'Homeobox' domain profile. 107 167 IPR001356 GO:0003677
Viun1g01868 267 CDD homeodomain 111 168 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01868 Viun-Chr1 30287785 30289263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01868 101 257 Homeobox Transcription Factor Family AT4G37790 61.585 5.73e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun1g01868 Homeodomain 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01868 K09338 - gmx:100810885 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01868 1 30287785 30289263 Viun1g01868 1 30287785 30289263 ECH
Viun1g01868 1 30287785 30289263 Viun7g00302 7 2134428 2136514 PCT