Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun1g01863 | ATGGAGGAAGAGACCTCCGATGCAATGAACCTTGATTTGAATCTGGGTCCAGGCCCAGAGCCTGAAACTGACCCCATAAGCAATGAAGCTGTGAACTTGGATGATTGGATAGGAGAGCCTCTTCAGAGGATTAGTGAAGCTGTGAGGTTTAGGGCACGACAACGATGGCGATGGCGGCATCTTCCCCTACCGCACCCTGAACTTCATGTCCACATCCCACCTGAAGCTGCGCGGCATTTTCATATTCCTCCTGAGGCCCACAATATCTCCATGGAATTGAACCAGTTTCTGGTCAATTCTGGAAATGGAACCGCCTTACAGGCGGGAGAAGGCAGTGTGGCGGCCGAGGAGAGAATGGAGGAGGTGCCAAAGGCATGTGAGAATGTGAATGGTGTTGCAGAGGACGAGGCTTCGCAGAAGAAGGATGATGTTGAGAAGGGTAGTGGCACTGATGGAGACTTTTTTGATTGTAACATCTGTTTGGACCTCTCAAGGGATCCTGTTGTGACTTGTTGTGGCCATTTGTTTTGTTGGCCTTGCCTGTATAGGTGGTTGCATCTGCATTCTGATGCGAAAGAGTGCCCAGTTTGCAAGGGAGAGGTGACTCTCAAAAGTGTTACCCCAATATATGGGCGAGGAAACAATGTCCGAGGTCATGAGGAGGATTCTGCTCTCAAGATCCCTCCTAGGCCCCAAGCAAGGAGGGTTGAGAGTCTGAGACAAACCATTCAGAGAAATGCATTTGCACTCCCTGTGGAAGAGATGATTCGGCGTCTTGGGAGTAGAATTGATCTTACTCGTGATTATGTTCAGCCACATGAAGTGGATGGTGGCCGTGAAAATGCAGAGAGAACTACTTCCTTGCTAAGTAGGTTCTTGACTGCTCGAGGGATGCGGAGAGAGCAGAATTTAGGGCCACTCCCAGAGGATGTGATGGCTTTTGCTCAGAATAATGCTAATAATACTGCTGAGGCAGGGGATAACCGAAGTAGGGTGCAACAATCCCATTTGCTTCGAAGAACACAATCACACAGAGCAACGCTTTCTACTCTTTCAGCACTCACTTCTGCTGAAAGGTTACTGGAGGCTTATTTCCGTAGCAATGCAATTGGCAGGAACCAAGAACAACCTTCACCTCCGGTTGATGACAGGGATTCTTTTTCAAGCATTGGCGCTGTTATAAATTCAGAGAGTCAAGTGGACACTGCTGTGGAGATTGATTCCATGGTATCCTTGTCAACATCCTCTTCTAGGAGGAGGAATGATGCTTCAAGATTGTCTGATGTGGATAGTGGAGATTCTCGTGCCCCAAGACGCAGACGTTTGAACTGA | 1332 | 0.485 | MEEETSDAMNLDLNLGPGPEPETDPISNEAVNLDDWIGEPLQRISEAVRFRARQRWRWRHLPLPHPELHVHIPPEAARHFHIPPEAHNISMELNQFLVNSGNGTALQAGEGSVAAEERMEEVPKACENVNGVAEDEASQKKDDVEKGSGTDGDFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRGNNVRGHEEDSALKIPPRPQARRVESLRQTIQRNAFALPVEEMIRRLGSRIDLTRDYVQPHEVDGGRENAERTTSLLSRFLTARGMRREQNLGPLPEDVMAFAQNNANNTAEAGDNRSRVQQSHLLRRTQSHRATLSTLSALTSAERLLEAYFRSNAIGRNQEQPSPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRLSDVDSGDSRAPRRRRLN | 443 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun1g01863 | 443 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 120 | 247 | IPR013083 | - | |
Viun1g01863 | 443 | SUPERFAMILY | RING/U-box | 152 | 210 | - | - | |
Viun1g01863 | 443 | ProSitePatterns | Zinc finger RING-type signature. | 172 | 181 | IPR017907 | - | |
Viun1g01863 | 443 | Pfam | Zinc finger, C3HC4 type (RING finger) | 157 | 197 | - | - | |
Viun1g01863 | 443 | MobiDBLite | consensus disorder prediction | 410 | 443 | - | - | |
Viun1g01863 | 443 | ProSiteProfiles | Zinc finger RING-type profile. | 157 | 198 | IPR001841 | - | |
Viun1g01863 | 443 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 127 | 334 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Viun1g01863 | 443 | FunFam | E3 ubiquitin-protein ligase RMA3 | 125 | 246 | - | - | |
Viun1g01863 | 443 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Viun1g01863 | 443 | MobiDBLite | consensus disorder prediction | 421 | 443 | - | - | |
Viun1g01863 | 443 | CDD | RING-HC_AtRMA-like | 155 | 198 | - | - | |
Viun1g01863 | 443 | SMART | ring_2 | 157 | 197 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun1g01863 | Viun-Chr1 | 30262372 | 30264708 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun1g01863 | 1 | 434 | C3H Transcription Factor Family | AT3G58030 | 53.215 | 8.88e-137 | 398 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun1g01863 | K10666 | - | gmx:100811099 | 756.518 |