Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01860 ATGGAGGAAGAGACCTCCGATGCAATGAACCTTGATTTGAATCTGGGTCCAGGCCCAGAGCCTGAAACTGACCCCATAAGCAATGAAGCTGTGAACTTGGATGATTGGATAGGAGAGCCTCTTCAGAGGATTAGTGAAGCTGTGAGGTTTAGGGCACGACAACGATGGCGATGGCGGCATCTTCCCCTACCGCACCCTGAACTTCATGTCCACATCCCACCTGAAGCTGCGCGGCATTTTCATATTCCTCCTGAGGCCCACAATATCTCCATGGAATTGAACCAGTTTCTGGTCAATTCTGGAAATGGAACCGCCTTACAGGCGGGAGAAGGCAGTGTGGCGGCCGAGGAGAGAATGGAGGAGGTGCCAAAGGCATGTGAGAATGTGAATGGTGTTGCAGAGGACGAGGCTTCGCAGAAGAAGGATGATGTTGAGAAGGGTAGTGGCACTGATGGAGACTTTTTTGATTGTAACATCTGTTTGGACCTCTCAAGGGATCCTGTTGTGACTTGTTGTGGCCATTTGTTTTGTTGGCCTTGCCTGTATAGGTGGTTGCATCTGCATTCTGATGCGAAAGAGTGCCCAGTTTGCAAGGGAGAGGTGACTCTCAAAAGTGTTACCCCAATATATGGGCGAGGAAACAATGTCCGAGGTCATGAGGAGGATTCTGCTCTCAAGATCCCTCCTAGGCCCCAAGCAAGGAGGGTTGAGAGTCTGAGACAAACCATTCAGAGAAATGCATTTGCACTCCCTGTGGAAGAGATGATTCGGCGTCTTGGGAGTAGAATTGATCTTACTCGTGATTATGTTCAGCCACATGAAGTGGATGGTGGCCGTGAAAATGCAGAGAGAACTACTTCCTTGCTAAGTAGGTTCTTGACTGCTCGAGGGATGCGGAGAGAGCAGAATTTAGGGCCACTCCCAGAGGATGTGATGGCTTTTGCTCAGAATAATGCTAATAATACTGCTGAGGCAGGGGATAACCGAAGTAGGGTGCAACAATCCCATTTGCTTCGAAGAACACAATCACACAGAGCAACGCTTTCTACTCTTTCAGCACTCACTTCTGCTGAAAGGTTACTGGAGGCTTATTTCCGTAGCAATGCAATTGGCAGGAACCAAGAACAACCTTCACCTCCGGTTGATGACAGGGATTCTTTTTCAAGCATTGGCGCTGTTATAAATTCAGAGAGTCAAGTGGACACTGCTGTGGAGATTGATTCCATGGTATCCTTGTCAACATCCTCTTCTAGGAGGAGGAATGATGCTTCAAGATTGTCTGATGTGGATAGTGGAGATTCTCGTGCCCCAAGACGCAGACGTTTGAACTGA 1332 0.485 MEEETSDAMNLDLNLGPGPEPETDPISNEAVNLDDWIGEPLQRISEAVRFRARQRWRWRHLPLPHPELHVHIPPEAARHFHIPPEAHNISMELNQFLVNSGNGTALQAGEGSVAAEERMEEVPKACENVNGVAEDEASQKKDDVEKGSGTDGDFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRGNNVRGHEEDSALKIPPRPQARRVESLRQTIQRNAFALPVEEMIRRLGSRIDLTRDYVQPHEVDGGRENAERTTSLLSRFLTARGMRREQNLGPLPEDVMAFAQNNANNTAEAGDNRSRVQQSHLLRRTQSHRATLSTLSALTSAERLLEAYFRSNAIGRNQEQPSPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRLSDVDSGDSRAPRRRRLN 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01860 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 247 IPR013083 -
Viun1g01860 443 SUPERFAMILY RING/U-box 152 210 - -
Viun1g01860 443 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Viun1g01860 443 Pfam Zinc finger, C3HC4 type (RING finger) 157 197 - -
Viun1g01860 443 MobiDBLite consensus disorder prediction 410 443 - -
Viun1g01860 443 ProSiteProfiles Zinc finger RING-type profile. 157 198 IPR001841 -
Viun1g01860 443 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 127 334 IPR045103 GO:0005783|GO:0006511|GO:0061630
Viun1g01860 443 FunFam E3 ubiquitin-protein ligase RMA3 125 246 - -
Viun1g01860 443 MobiDBLite consensus disorder prediction 1 23 - -
Viun1g01860 443 MobiDBLite consensus disorder prediction 421 443 - -
Viun1g01860 443 CDD RING-HC_AtRMA-like 155 198 - -
Viun1g01860 443 SMART ring_2 157 197 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01860 Viun-Chr1 30262347 30264708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01860 1 434 C3H Transcription Factor Family AT3G58030 53.215 8.88e-137 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01860 K10666 - gmx:100811099 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01860 1 30262347 30264708 Viun1g01860 1 30262347 30264708 ECH