Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01844 ATGCGGGTTCCTGCGTGGATTTCATGTATGGTTTCTTCATGTCTAAGGCCTTGGAAGCCACATACCAACATCAGCAGTGATGATGAAGATGATCCTAGTACATCCACTACAAGCACACTGGTTCAATGGCGTAGAGATCTTCTGAGGCATTCTCATGGTGAATTCTCCTATGCTGTGGTTCAGGGCAATGTAGAAATTGAAGATCATAGCCAAGTTGAGATTGGATCTAAGGGCATATTTGTCGGGGTTTATGATGGTCACGGTGGTGCTACTTGTTCCCATTTCCTTAAAACTCGTCTCTTCCCGATCGTAATAAACAGTGCTAGGGATCATGGAACTATCAGCGATGACACGCTGAGGGAATCTGTTTGTGCTGTAGAGAGTGCTTTTATGGAAAATATAGGGGTGGGAACTCCAGCAGTACAAATGTGTAATACTAGAGTAGGTTCCTGTTGTCTGGCTGCTGTTATCTGGGAAGGAGTTCTACATATCGCCAATCTTGGAGACTCTCGTGCCGTGGTTGGAACTTTAGGTAGATGTAGAAGCATCACTGCTGTACAGTTGACAACAGATCACAATTGCTGTAGGGAGGAAATTAGACAAGAACTTCAGGCTGCCCATCCAACTGATCCAGAGATTGTAGTCATTGATCGTGGAGCATGGCGTGTTAAAGGCTTCATCCAGGTGTCCAGAACCATAGGAGATGCACATCTGAAGATTCCAGGGCTTTTGAGGTCACCTCTCACTGTACCTGTGCTGTCTGCAGAACCCAGTGTAACTTCAAGAACTCTGAGTTCCAATGACAAATTTCTTATATTTGCATCCGATGGACTTTGGGATCTCTTGACAAATCAGCATGCTGCTGAGATTGTTCATCTGAATCCACGGAGAGGGATTGCAAGAAAGCTTATTAAGGCTGCTCTAAAGGCGGCAGCTAGAAGAGCGAAGGTAGAATATTCAACGCTTATGGAGGTGCCGGCAGAGGGCAGACGGATGATTCATGATGACATTACTGTGGTGGTTGTCTTCCTCGACGGTACCTCGCATCACCATGTCACAGAGTTGTCCGTAAGAGGCTTCGAAGAAGCAGCTGGACCATCTAATTTTCGAAGTGTACGCAATTTCGGGTGA 1131 0.4598 MRVPAWISCMVSSCLRPWKPHTNISSDDEDDPSTSTTSTLVQWRRDLLRHSHGEFSYAVVQGNVEIEDHSQVEIGSKGIFVGVYDGHGGATCSHFLKTRLFPIVINSARDHGTISDDTLRESVCAVESAFMENIGVGTPAVQMCNTRVGSCCLAAVIWEGVLHIANLGDSRAVVGTLGRCRSITAVQLTTDHNCCREEIRQELQAAHPTDPEIVVIDRGAWRVKGFIQVSRTIGDAHLKIPGLLRSPLTVPVLSAEPSVTSRTLSSNDKFLIFASDGLWDLLTNQHAAEIVHLNPRRGIARKLIKAALKAAARRAKVEYSTLMEVPAEGRRMIHDDITVVVVFLDGTSHHHVTELSVRGFEEAAGPSNFRSVRNFG 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01844 376 CDD PP2Cc 55 344 IPR001932 -
Viun1g01844 376 ProSiteProfiles PPM-type phosphatase domain profile. 54 344 IPR001932 -
Viun1g01844 376 SUPERFAMILY PP2C-like 59 346 IPR036457 -
Viun1g01844 376 ProSitePatterns PPM-type phosphatase domain signature. 80 88 IPR000222 GO:0043169
Viun1g01844 376 PANTHER PROTEIN PHOSPHATASE 39 342 IPR015655 GO:0004722|GO:0006470
Viun1g01844 376 SMART PP2C_4 48 342 IPR001932 -
Viun1g01844 376 Gene3D - 33 353 IPR036457 -
Viun1g01844 376 Pfam Protein phosphatase 2C 76 312 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01844 Viun-Chr1 30151306 30153714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01844 5 369 PP2C-type Phosphatase Gene Family AT5G06750 46.512 4.12e-111 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01844 K01102 - gmx:100806476 385.185