Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01842 ATGGGAATAGAGCGCGTGCAGTGTGGCTATGTCTCTCTGGACGAAACCTTCGAAATTAGAAAAGAGAAGTATCACGGTCAACAGTACTGCCATATTTACTTCGCACGCCTTCATTTGATGCGAACTCTCTTGTATTCACTCGTTCCTCACTGGAAACCTAATTATCCCGTGTGTACGGTGCTGGAATTGGAAGAGGGCAAGGAATGTGTCATTGTTGGAACCCTCTACAAACACATGAAGCTCAAGCCTCGCATACTTGATGAGTATTCTAAGCAGAAATCAGTGGTTCCACTTGTCAAGCCACATAACTTCATGCACTCGGATGATTACCTAGTTTTGGAAGATGAAAGTGGGCGGGTTAAGCTCAATGGAAATATCATTCCGCCGTCTGAATATGTAACAGGAATTGTGGTCGCTTTACTCGGAAAGGAAAGTGGGGCAGGTGACTTTTTGGTTCAGGATGTACTAGATACTGGCTTACCCCCACAGATAGAATTCCCCCTTAAATCAGGGGAAGACAAATACGTTGTTCTTGTGTCAGGTTTAAGTGTTGGTAGCAGCACCTCTAATCCTCTTCAGTTTCAGCTTCTCATTGACCAGATTACGGGACATTTAGGAGATGAGAAGGCTCAACGTTTTGCATCAAAAATTGTTCAAGTTGTCTTTGCTGGAAATTTAGTTGAGATACCTCAGAGAATTCTTAACGGACAGAATTTGGCTTCAGAGGATTTTGCAAGAATGTCTGAGCCAATAAGGGAGCTAGACATTATGTTGAGTCAGATAGCTGCTGGTTTGCCTTTGGATATCATGCCAGGACCCAGTGACCCTGCGAATTTCTCATTGCCACAACAGTCATTGCATGGATGCCTTTTCCCTGGGTCTTCAACATATAATACTTTCAGATCTTGTACAAATCCTCATTGTTTTGAGCTTGATAATGTCAGGTTTCTTGGGACATCGGGTCAAAATGTAGATGATCTTGATAAATATTCGGATGCAAAAGATAAACTTGAATTCATGGAAAGGACATTAAGATGGAGGCATTTAGCACCCACTGCACCTAATACTCTTGGGTGCTTTCCTTTCACTGAGAGGGATCCTTTCTTCCTTGAGAGTTGTCCTCACGTTTACTTTGTTGGAAATCAAGATAAATTTGAAACTCGTATCATAAATGGATCAGAAGGGCAGTTGGTGAGACTCATATGTGTTCCTAAATTCAGTGAAACTGGAGTTGCTGTTATGATTAACCTAAGGGACCTCGAATGTCATGCTCTTAGTTTTACCGTTGATCTATAA 1296 0.4205 MGIERVQCGYVSLDETFEIRKEKYHGQQYCHIYFARLHLMRTLLYSLVPHWKPNYPVCTVLELEEGKECVIVGTLYKHMKLKPRILDEYSKQKSVVPLVKPHNFMHSDDYLVLEDESGRVKLNGNIIPPSEYVTGIVVALLGKESGAGDFLVQDVLDTGLPPQIEFPLKSGEDKYVVLVSGLSVGSSTSNPLQFQLLIDQITGHLGDEKAQRFASKIVQVVFAGNLVEIPQRILNGQNLASEDFARMSEPIRELDIMLSQIAAGLPLDIMPGPSDPANFSLPQQSLHGCLFPGSSTYNTFRSCTNPHCFELDNVRFLGTSGQNVDDLDKYSDAKDKLEFMERTLRWRHLAPTAPNTLGCFPFTERDPFFLESCPHVYFVGNQDKFETRIINGSEGQLVRLICVPKFSETGVAVMINLRDLECHALSFTVDL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01842 431 Gene3D - 167 430 - -
Viun1g01842 431 Pfam DNA polymerase delta subunit OB-fold domain 28 155 IPR040663 -
Viun1g01842 431 FunFam DNA polymerase delta subunit 2 34 158 - -
Viun1g01842 431 Gene3D - 35 158 - -
Viun1g01842 431 CDD MPP_PolD2_C 175 427 IPR041863 -
Viun1g01842 431 FunFam DNA polymerase delta small subunit 161 431 - -
Viun1g01842 431 Pfam DNA polymerase alpha/epsilon subunit B 176 386 IPR007185 GO:0003677|GO:0006260
Viun1g01842 431 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 5 427 IPR024826 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01842 Viun-Chr1 30135098 30141350 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01842 4 431 Core DNA Replication Machinery Family AT2G42120 71.963 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01842 K02328 - gmx:100780072 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01842 1 30135098 30141350 Viun1g01842 1 30135098 30141350 ECH