Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01836 ATGATTTTGGCAAGAAATATTGATCAAGAAATAGTACAAGCCCATCATGATTCCTTCCGCATTAAAGACTTGGGGGAATTATGGATTTTTCTTGGTTTTGAAGTGGCGTGGACAAAAAGCACTTCTGGTTGTCCGTTTGGTGAGGGTTGCCACTTCCTGCATTACGTTCCTGGTGGCTATAATGCTGTTGCCCATATAATGAATCTAACACCTGCAGCACCTCCAGCATCAAGAAATGTAGCAGCTCTGCCACCTGTGCCAAATGGGTCTGCACCAGCTGCTGTAAAGACCCGCATATGCAACAAATTTAATACTGCAGAAGGTTGCAAATTTGGTGACAAATGCCACTTTGCCCATGGTGAATGGGAACTTGGGAAGCAAATTGCTCCATCATTTGATGACCATCGAGCGTTGGGGCCCACTGCAGCAGGTCGTTTTGGTGGTCGAATGGAGCCTTCTCCTGGTCCTGCTACAAGTTTTGGTTCCCATGCCACTGCCAAGATCAGCGTAGAAGCATCCCTTGCTGGTGCAATCATTGGGAAGGGTGGTGTGAACTCAAAACAGATATGCCGCCAAACTGGAGCCAAACTTTCGATCAGGGAGCATGAATCGGATCCTAATATTAGAAACATTGAACTAGAGGGAAATTTTGAGCAAATCAAGGAAGCTAGTAATATGGTGAAGGATTTGCTACTGACCCTGCAAATGTCTGCATCAAAAGCTAACCCAGGTGTTCCTGGTGCACCTACTCGAGAGCATGGAAGCAATTTTAAGACGAAGCTGTGCGAGAATTTTTCCAAAGGGTCTTGCACATTTGGAGAGAGATGCCACTTTGCTCATGGAGCTGCCGAATTGCGTAAATCAGTATGA 870 0.4586 MILARNIDQEIVQAHHDSFRIKDLGELWIFLGFEVAWTKSTSGCPFGEGCHFLHYVPGGYNAVAHIMNLTPAAPPASRNVAALPPVPNGSAPAAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKQIAPSFDDHRALGPTAAGRFGGRMEPSPGPATSFGSHATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNIRNIELEGNFEQIKEASNMVKDLLLTLQMSASKANPGVPGAPTREHGSNFKTKLCENFSKGSCTFGERCHFAHGAAELRKSV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01836 289 Gene3D K Homology domain, type 1 159 254 IPR036612 GO:0003723
Viun1g01836 289 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 153 235 IPR036612 GO:0003723
Viun1g01836 289 ProSiteProfiles Zinc finger C3H1-type profile. 256 283 IPR000571 GO:0046872
Viun1g01836 289 FunFam Zinc finger CCCH domain-containing protein 89 126 - -
Viun1g01836 289 SMART c3hfinal6 256 282 IPR000571 GO:0046872
Viun1g01836 289 SMART c3hfinal6 94 121 IPR000571 GO:0046872
Viun1g01836 289 ProSiteProfiles Type-1 KH domain profile. 163 227 - -
Viun1g01836 289 Pfam KH domain 166 228 IPR004088 GO:0003723
Viun1g01836 289 SMART kh_6 162 232 IPR004087 GO:0003676
Viun1g01836 289 Pfam RNA-binding, Nab2-type zinc finger 44 54 - -
Viun1g01836 289 CDD KH-I_AtC3H36_like 166 231 - -
Viun1g01836 289 Gene3D - 90 126 - -
Viun1g01836 289 Gene3D - 255 288 - -
Viun1g01836 289 SUPERFAMILY CCCH zinc finger 255 286 IPR036855 GO:0046872
Viun1g01836 289 PANTHER CCCH ZINC FINGER/TIS11-RELATED 40 148 IPR045877 GO:0003729
Viun1g01836 289 FunFam Zinc finger CCCH domain-containing protein 252 287 - -
Viun1g01836 289 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 121 IPR000571 GO:0046872
Viun1g01836 289 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 257 281 IPR000571 GO:0046872
Viun1g01836 289 SUPERFAMILY CCCH zinc finger 93 125 IPR036855 GO:0046872
Viun1g01836 289 ProSiteProfiles Zinc finger C3H1-type profile. 94 122 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01836 Viun-Chr1 30083016 30085171 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun1g01836 KH_1 1.1e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01836 - - gmx:100803981 469.544