Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01834 ATGATCCTCAAGTTCATATTCCTACTGATGTTAGTCAACCTCTTGACCCCAAAATTGTTCCAAACACAACTGTCCTCAAGCTCAACCTATCCTACATCCGTTTCAGAAGAAACGAACTCCCGTCGAACACCTGAAACCACTACACCTGAAACCAATGTTTCAACTGAAATGAACACTGCAAAAGTTCACATGATTTCCCCTCCTGGATTGAATAAAGTCTTGCCAGGACTGAGTAAACAACGAAGCACTTCTGGTTGTCCGTTTGGTGAGGGTTGCCACTTCCTGCATTACGTTCCTGGTGGCTATAATGCTGTTGCCCATATAATGAATCTAACACCTGCAGCACCTCCAGCATCAAGAAATGTAGCAGCTCTGCCACCTGTGCCAAATGGGTCTGCACCAGCTGCTGTAAAGACCCGCATATGCAACAAATTTAATACTGCAGAAGGTTGCAAATTTGGTGACAAATGCCACTTTGCCCATGGTGAATGGGAACTTGGGAAGCAAATTGCTCCATCATTTGATGACCATCGAGCGTTGGGGCCCACTGCAGCAGGTCGTTTTGGTGGTCGAATGGAGCCTTCTCCTGGTCCTGCTACAAGTTTTGGTTCCCATGCCACTGCCAAGATCAGCGTAGAAGCATCCCTTGCTGGTGCAATCATTGGGAAGGGTGGTGTGAACTCAAAACAGATATGCCGCCAAACTGGAGCCAAACTTTCGATCAGGGAGCATGAATCGGATCCTAATATTAGAAACATTGAACTAGAGGGAAATTTTGAGCAAATCAAGGAAGCTAGTAATATGGTGAAGGATTTGCTACTGACCCTGCAAATGTCTGCATCAAAAGCTAACCCAGGTGTTCCTGGTGCACCTACTCGAGAGCATGGAAGCAATTTTAAGACGAAGCTGTGCGAGAATTTTTCCAAAGGGTCTTGCACATTTGGAGAGAGATGCCACTTTGCTCATGGAGCTGCCGAATTGCGTAAATCAGTATGA 996 0.4598 MILKFIFLLMLVNLLTPKLFQTQLSSSSTYPTSVSEETNSRRTPETTTPETNVSTEMNTAKVHMISPPGLNKVLPGLSKQRSTSGCPFGEGCHFLHYVPGGYNAVAHIMNLTPAAPPASRNVAALPPVPNGSAPAAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKQIAPSFDDHRALGPTAAGRFGGRMEPSPGPATSFGSHATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNIRNIELEGNFEQIKEASNMVKDLLLTLQMSASKANPGVPGAPTREHGSNFKTKLCENFSKGSCTFGERCHFAHGAAELRKSV 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01834 331 CDD KH-I_AtC3H36_like 208 273 - -
Viun1g01834 331 Pfam RNA-binding, Nab2-type zinc finger 86 96 - -
Viun1g01834 331 SMART c3hfinal6 136 163 IPR000571 GO:0046872
Viun1g01834 331 SMART c3hfinal6 298 324 IPR000571 GO:0046872
Viun1g01834 331 Gene3D K Homology domain, type 1 201 296 IPR036612 GO:0003723
Viun1g01834 331 SMART kh_6 204 274 IPR004087 GO:0003676
Viun1g01834 331 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Viun1g01834 331 PANTHER CCCH ZINC FINGER/TIS11-RELATED 80 190 IPR045877 GO:0003729
Viun1g01834 331 MobiDBLite consensus disorder prediction 26 52 - -
Viun1g01834 331 Pfam KH domain 208 270 IPR004088 GO:0003723
Viun1g01834 331 SUPERFAMILY CCCH zinc finger 135 167 IPR036855 GO:0046872
Viun1g01834 331 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 195 277 IPR036612 GO:0003723
Viun1g01834 331 SUPERFAMILY CCCH zinc finger 297 328 IPR036855 GO:0046872
Viun1g01834 331 FunFam Zinc finger CCCH domain-containing protein 131 168 - -
Viun1g01834 331 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 299 323 IPR000571 GO:0046872
Viun1g01834 331 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 163 IPR000571 GO:0046872
Viun1g01834 331 Gene3D - 297 330 - -
Viun1g01834 331 Gene3D - 132 168 - -
Viun1g01834 331 ProSiteProfiles Type-1 KH domain profile. 205 269 - -
Viun1g01834 331 FunFam Zinc finger CCCH domain-containing protein 294 329 - -
Viun1g01834 331 ProSiteProfiles Zinc finger C3H1-type profile. 298 325 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01834 Viun-Chr1 30078833 30085171 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun1g01834 KH_1 1.4e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01834 - - gmx:100803981 469.544