Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01830 ATGAACGAGAACAAGGTTCATTGGGGAGGATTGATTCAACAAAGTCATGGACTAAGTGGGGATTTTAATTCTGAGTTTGGTAATCATTATTGTCAATATTTTGATATCAGACAGGCCTGGAATATGGGACCACTTACGGTGGTTGGAGGAGAAGCTACAGATCAGTTGCCAAACATAGGCCATGTCAAATCATCTGGCACCATTATCAGCCGTTTTGAGTCACCAGCCTCTGCGTTTTATGCTGCAGAAAACTGCATGGGATTTGCAGAATATGATTGCCAACTTGGTATTCAATCTCAGTTATGCAAGATTAATGACTTGGAATTCCCTCTGTATCAATCTCCCAGGGAAAATCTTTTCTTGGATTCAACAAACCAACCTGACTCCAGCTACGATTTGTCAAACACCTTGCAGTCAATAGTGAAATCTCAATTGAATAATAACCAATGTCGTGTATCCCCTGAAAAGTCCAATAAAATTTCATGTGGGAATTTTCCCACCACCAAGTTCCTCCCAATTGAACAACAGAAGTTGTTCATTGATGGTGTCATCAGGGGCTCCTCATTTCCTAACAAGGGAATTCAGGATCGCATGGTTGGTCGTGGATCTTTTAATTTACCCGTTGCACATATGAGATTTTCTTCTCAGATCGAGAAGTTGTCTCCAACACTTTCAGCAGGAAGTGTGTCCACTGTTGGAAACTCTGCTTCTAATGGGGCAGTAGTCTCAAGCAAAACACGTATCAGATGGACTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGCTCTGAGCAGGCAACACCAAAAGCTATATTAAAGATGATGGACACAGATGGTTTGACTATCTTCCATGTCAAAAGTCATCTGCAGAAATATAGAATTGCAAAATTCATTCCAGAGCCTAGCCAAGGGAAATCTGACAAAAGAACCCACATAAAGAATGTGCATCATCTTGATGTCAAAACAGGCTTACAAATTAGAGAGGCACTTAAGCTTCAATTAGATGCTCAAAGGTGTCTTCACGAACAACTAGAGGTTCAGAGAAAATTACAGTTGAGAATTGAGGAACAAGGAAGGCAACTAAAAAAAATGTTTGACCAGCAACAAAAGACAACTAATAACCTCTCAAATACTCAGGATTCAGGCACTGATGAGACAACAATTACTCATAAAGATGGTGAAGTTTCTGTTTCCTTCTTCACTTCCAAAGCCTCTCCAAGCCAATAA 1242 0.4042 MNENKVHWGGLIQQSHGLSGDFNSEFGNHYCQYFDIRQAWNMGPLTVVGGEATDQLPNIGHVKSSGTIISRFESPASAFYAAENCMGFAEYDCQLGIQSQLCKINDLEFPLYQSPRENLFLDSTNQPDSSYDLSNTLQSIVKSQLNNNQCRVSPEKSNKISCGNFPTTKFLPIEQQKLFIDGVIRGSSFPNKGIQDRMVGRGSFNLPVAHMRFSSQIEKLSPTLSAGSVSTVGNSASNGAVVSSKTRIRWTKDLHEKFVECVNRLGGSEQATPKAILKMMDTDGLTIFHVKSHLQKYRIAKFIPEPSQGKSDKRTHIKNVHHLDVKTGLQIREALKLQLDAQRCLHEQLEVQRKLQLRIEEQGRQLKKMFDQQQKTTNNLSNTQDSGTDETTITHKDGEVSVSFFTSKASPSQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01830 413 Pfam MYB-CC type transfactor, LHEQLE motif 329 376 IPR025756 -
Viun1g01830 413 Coils Coil 332 352 - -
Viun1g01830 413 MobiDBLite consensus disorder prediction 397 413 - -
Viun1g01830 413 MobiDBLite consensus disorder prediction 371 413 - -
Viun1g01830 413 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 238 386 IPR044848 GO:0003700
Viun1g01830 413 NCBIfam myb-like DNA-binding domain, SHAQKYF class 245 300 IPR006447 GO:0003677
Viun1g01830 413 Gene3D - 244 303 - -
Viun1g01830 413 FunFam Myb family transcription factor 244 302 - -
Viun1g01830 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 244 302 IPR017930 -
Viun1g01830 413 SUPERFAMILY Homeodomain-like 243 299 IPR009057 -
Viun1g01830 413 MobiDBLite consensus disorder prediction 371 389 - -
Viun1g01830 413 Pfam Myb-like DNA-binding domain 249 298 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01830 Viun-Chr1 30017449 30020502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01830 229 387 G2-like Transcription Factor Family AT4G28610 54.321 2.38e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun1g01830 Myb_DNA-binding 1.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01830 - - gmx:100527766 684.871