Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01827 ATGTTCCCCTTTCGGAAACTCCACGCTCAGTGCTTCTTCTTCCTTCTTAAACCCTGCCAAAACCCTAGATTCCAGACCACCAAATCCGCCACTAAATTCGCCGGAAAAGCCACCGTAAAACAAGCCCAAGCCGCATTGCTCGAGTACCTCCACTCCACGCGCAGCCTCAACTTCTTAGACGCCGACAACATGTGCAAAAACTCGCCCTCCTTCCTCCAGGACCTCCTCGCCAAAACCCACTTGCACACTCCGCACGTCGACACCAAGCGCTCCATCTCGCGCTACCTCCGCTACCACCCCATTAACGAGTTTGAGCCCTTCTTCGAGAGCGCGGGTCTCTCCCCTTCCGAGTACGCGCCCCTTCTCCCGCCTCACATGATTTATCTAAACGATGACGTTCTGCTCATGGAGAATCACCAGGCGCTCTGCAACTACGGGGTTCCCCGCACCAAGATGGGGAGGGTTTTCAAACTTGCACCTCAGGTTTTTCGGTATAAACCCGGGGTCTTGATCTCGAAGCTTCGGGAATACGAAAACCTCGGTGTTTCGCGGAAGACTTTGATCAATGTGGTTGCTTTCAGCCCCTGCATTTTGGTTGGGGGTGTTGATTTTGATTTTGTTAAGGTTGTGGAGATGTTGAAACGTGTTATTGGAAAGGATTGCGAATGGATTGGAGAGCATTTGTTGATTAACAAGGGTTGTTGTAATTGGAGGGTAATGTTTCAGGTTTTGAGTTTACTTTCTACGGTTTTCAATGAAAAACAATTGTGTGATTTAATCACTCGTCACCCTGGATTGATTTTTGAGGAATCTGGAGGTTGTGTGTTATCCTTGATTGGCTTTTTGTTGAAATTTGGATTGTCTGTAAACCGGGTTTGTGTCATGCTGCACGAGTTTCCGGAGATTCGGGCTGTGAAATTTTTGTCCAATTTGAGGCTGTGTTTTCTGTTCTTGACAGAGATCAAGATGGAGGCTTCGGAGATTGGGAGGATTTTGCAGTCTCACTGCTTGGTGTTGGGATCCTTCACCATGAAGAGAACGATTACTTTGCTTACTAACTTGAATGTTGGAAAGAAGCGACTGTGTAGAGTTGTGAGGGATGATCCTGTAGTAATGAAGAGTTGGGCTTTGGGAAGGAGAATTGAGCCTCTGGTTAACTCGTATGTGGAGTATGAATCCAAGGCGCTGAAGAAGGAGTTCATGCTGAGGTTGGGGTATGAAGAGAACTCCAAAGCAATGAATGAGTCGATTAAGTTGTTCAGGGGTAGGGGAGCTGAGCTTCAGGAGAGACTTGAATTTATTGTTAATGCAGGGTTGGATTATGAGGTTGTCTGTAAGATGATTCGAGAGTCCCCGCGGATTCTTAGTCAGACCACGGATAGGATAAACATGAAAATTGAGTCTCTTGTGAATGAAGGATATTCAATGTCGGATTTGGCTAGTTTTCCTTCTTTCCTTTCCTATTCAGCTGAAAGGGTTAAGCTGAGGTTTTCAATGTATAATTGGCTAAAAAGGCATGGAGCTGCAGAAGCAGGGCTTGCTTTGAGCACTATAATTGCATGCTCTGAGAAAGCGTTTGAGAAGATGTACGTGAATCGCCATCCGTCTGGCCTTCAAGTATGGCGGGATTTAAAGGCACAGATTTCTTCTGAGTCTTAG 1659 0.4647 MFPFRKLHAQCFFFLLKPCQNPRFQTTKSATKFAGKATVKQAQAALLEYLHSTRSLNFLDADNMCKNSPSFLQDLLAKTHLHTPHVDTKRSISRYLRYHPINEFEPFFESAGLSPSEYAPLLPPHMIYLNDDVLLMENHQALCNYGVPRTKMGRVFKLAPQVFRYKPGVLISKLREYENLGVSRKTLINVVAFSPCILVGGVDFDFVKVVEMLKRVIGKDCEWIGEHLLINKGCCNWRVMFQVLSLLSTVFNEKQLCDLITRHPGLIFEESGGCVLSLIGFLLKFGLSVNRVCVMLHEFPEIRAVKFLSNLRLCFLFLTEIKMEASEIGRILQSHCLVLGSFTMKRTITLLTNLNVGKKRLCRVVRDDPVVMKSWALGRRIEPLVNSYVEYESKALKKEFMLRLGYEENSKAMNESIKLFRGRGAELQERLEFIVNAGLDYEVVCKMIRESPRILSQTTDRINMKIESLVNEGYSMSDLASFPSFLSYSAERVKLRFSMYNWLKRHGAAEAGLALSTIIACSEKAFEKMYVNRHPSGLQVWRDLKAQISSES 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01827 552 PANTHER CGI-12 PROTEIN-RELATED 243 534 IPR003690 GO:0003690|GO:0006355
Viun1g01827 552 Pfam mTERF 246 384 IPR003690 GO:0003690|GO:0006355
Viun1g01827 552 Pfam mTERF 425 527 IPR003690 GO:0003690|GO:0006355
Viun1g01827 552 SMART mt_12 476 509 IPR003690 GO:0003690|GO:0006355
Viun1g01827 552 SMART mt_12 257 288 IPR003690 GO:0003690|GO:0006355
Viun1g01827 552 SMART mt_12 153 183 IPR003690 GO:0003690|GO:0006355
Viun1g01827 552 SMART mt_12 293 324 IPR003690 GO:0003690|GO:0006355
Viun1g01827 552 SMART mt_12 445 475 IPR003690 GO:0003690|GO:0006355
Viun1g01827 552 SMART mt_12 188 220 IPR003690 GO:0003690|GO:0006355
Viun1g01827 552 Gene3D Transcription termination factor 3, mitochondrial 70 271 IPR038538 -
Viun1g01827 552 Gene3D Transcription termination factor 3, mitochondrial 274 544 IPR038538 -
Viun1g01827 552 FunFam Transcription termination factor MTEF18, mitochondrial 278 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01827 Viun-Chr1 29997668 29999326 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun1g01827 mTERF 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01827 - - gmx:100807690 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01827 1 29997668 29999326 Viun1g01827 1 29997668 29999326 ECH