Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01821 ATGATTAGCCACTTTCTCTATGTGCACTTTAATCTCTTTGTATTCTCAATTTTGATTTCTCAGAGCTTGGCGTTCACGCATCCATGTGAAGTGTCAGCTCTGCAGGATCTATACAGGACCTTTAACTACCCACCTGTGCTCAAGGGATGGAATGGTAGCGATCCTTGTGGAGAGTCTTGGACAGGAGTTGCTTGTTCTGGACCATCAGTTATACAGCTAAAACTTCAAGGATTAAACCTCACTGGGTATATTGGAAGCCTGTTACATAATCTACCTAACTTGAATCAATTTGATGTCAGTTCAAATAACATAGAGGGCGAAATTCCATTCGGTTTACCCCCCAATATGACATATATGAATTTAAGCCACAATTTACTACATGGACCAATCGGTGATGTATTTAGTGCTTTAAATAATCTCAAAGAAATGGACCTTTCATACAATAATTTCTCAGGAGATCTACCATATTCATTTGGTTCCTTAAGAAACCTTGCCAGATTGTTCCTGCAGAATAACAGATTCACTGGATCAGTCACCTACTTGGCTGAACTTCCGCTAACAGATTTGAACATTCAAGATAATCTGTTTAGTGGCATTCTTCCGCAGCATTTTCAATCCATACTGAATTTATGGATTGGAGACAATAAATTCCATGTGGCCGACAACTCTCCTCCCTGGACTTTTCCGCCTGATACCGTGTCAATTGAGCAGAACACTAGTAGCCCACCCACGACTCAGGCAAATGCCATCCAGAATTGTTCTCCTTCCAGTGAGGCTCCTCCTCGAGTAAATGAGACTCATCCCAGGAAAAATCATGTAGGTCCAGGAGAAATAGCATTTATGATTGGTGGAGGAACACTAATGGCCACAGGGGTGGCTCTCTTTGTTGCAATCCTTTTGAATAAATTTCGTCTAGAGAGCCCGAACTTGAAGAGCTCAGAAAGCAGCCATGGCTCATTTCCTTCTCATCCGACCAGTGCAACCATAGGGGTATCTTCTACCGCACTCGAGGAGAGCCCAAGCATTCCTCCCCTCTTTAATTCTGCATCCTTTTTGGGTCCTGTGAGATTACTTTCCATGAACCATAACAATACCGAGGAACCATTCAGAAAAGGTTTTTCTAAAAGTGACAGATACACCGGAAGAACGAAAATTTACACAGTAGCAGAGCTTGAGTTAGCTACTAATTGCTTCAGTGAAGCCAACATTCTAGGAGAGGGATCTCTTGGCCCTGTTTATAGAGCTAAATTTCCGGATGACAAAATTTTGGCCGTGAAGAAGATAAACGTGGCGCAAATGTCTTTCAAAGATGAGGAAAAGCTCTTGGACGTCATTTGCACGGTTTCCCGACTGAAGCACCCCAACATCGTAGCACTCAATGGTTACTGCTTGGATAAAGGAAAGGGTCTACTTGTTTACGATTATGTTGGAAATATCACTCTAAACGACGCCCTTCACAGCAAGGCATGCGAACCTCTACCATGGGTTCACCGTCTCCGGATTGCTCTAGGTGTTGCTCAGGCTCTAGACTATTTGCACTCAGCGTTCTGCCGTCCCGTGGCCCACGGCAATTTGAAGTCTTCCAATGTTCTACTGGATGAAAATTTGATGCCTCGAGTTTGTGACTGTAGCTTGGTTATTTTGCGAACACTTATCAGTCAAGTTGAAATTCCGGCTAATGAGATTGATATTGAAGAGATGGGCTACTATGCGCCTGATCATGGCCAACCAGGAACCAGCAGCAGAAAGAAAGACGTTTTTGCCTTCGGGGTGTTGCTGCTGGAACTGTTAACAGGAGAGAAACCTTTTGATAGAACCAGGTCAGTGGAGGAGCAGTATCTGGTGAAATGGGCTCCGCCGATGCTTCCTTATAGAGCAAGTTTGGAACAGTTGGTGGATCCCCGCATGAAAAGAACATTTTCGTCCAGGGCTCTTTCTCGTTATGCTGATATCATCTCCCTCTGTATACAGCCTGGAAGGCAACTCCGTCCTGCAATGGCCGAAATTATGAAGTCTCTTGAATCTTTATACCAGATGTTCGACATTGAAAAGAACGATGTAGCAGATGGTACTGAACTTGATCCATTTTAG 2091 0.4376 MISHFLYVHFNLFVFSILISQSLAFTHPCEVSALQDLYRTFNYPPVLKGWNGSDPCGESWTGVACSGPSVIQLKLQGLNLTGYIGSLLHNLPNLNQFDVSSNNIEGEIPFGLPPNMTYMNLSHNLLHGPIGDVFSALNNLKEMDLSYNNFSGDLPYSFGSLRNLARLFLQNNRFTGSVTYLAELPLTDLNIQDNLFSGILPQHFQSILNLWIGDNKFHVADNSPPWTFPPDTVSIEQNTSSPPTTQANAIQNCSPSSEAPPRVNETHPRKNHVGPGEIAFMIGGGTLMATGVALFVAILLNKFRLESPNLKSSESSHGSFPSHPTSATIGVSSTALEESPSIPPLFNSASFLGPVRLLSMNHNNTEEPFRKGFSKSDRYTGRTKIYTVAELELATNCFSEANILGEGSLGPVYRAKFPDDKILAVKKINVAQMSFKDEEKLLDVICTVSRLKHPNIVALNGYCLDKGKGLLVYDYVGNITLNDALHSKACEPLPWVHRLRIALGVAQALDYLHSAFCRPVAHGNLKSSNVLLDENLMPRVCDCSLVILRTLISQVEIPANEIDIEEMGYYAPDHGQPGTSSRKKDVFAFGVLLLELLTGEKPFDRTRSVEEQYLVKWAPPMLPYRASLEQLVDPRMKRTFSSRALSRYADIISLCIQPGRQLRPAMAEIMKSLESLYQMFDIEKNDVADGTELDPF 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01821 696 SUPERFAMILY Protein kinase-like (PK-like) 375 680 IPR011009 -
Viun1g01821 696 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Viun1g01821 696 Gene3D Transferase(Phosphotransferase) domain 1 477 692 - -
Viun1g01821 696 SUPERFAMILY L domain-like 29 215 - -
Viun1g01821 696 Pfam Protein kinase domain 399 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01821 696 Gene3D Ribonuclease Inhibitor 26 263 IPR032675 -
Viun1g01821 696 MobiDBLite consensus disorder prediction 230 274 - -
Viun1g01821 696 Pfam Leucine rich repeat 114 174 IPR001611 GO:0005515
Viun1g01821 696 MobiDBLite consensus disorder prediction 230 261 - -
Viun1g01821 696 Gene3D Phosphorylase Kinase; domain 1 361 475 - -
Viun1g01821 696 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 27 118 - -
Viun1g01821 696 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 21 676 IPR046959 -
Viun1g01821 696 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 119 228 - -
Viun1g01821 696 FunFam Leucine-rich repeat receptor-like protein kinase 476 684 - -
Viun1g01821 696 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 362 475 - -
Viun1g01821 696 ProSiteProfiles Protein kinase domain profile. 398 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01821 Viun-Chr1 29951504 29956621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01821 12 696 Strubbelig Receptor Gene Family AT5G06820 47.844 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Viun1g01821 Pkinase 1.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01821 - - gmx:100775254 1103.97