Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01819 ATGGGTCCCCAAAGCAACCTTCTATCTCTTTTGGTTGCTCTGGCCGCACTTTTTTCATCTTTGTATCTCATAAATCCAATTCCAAAGTTTTTCATAAATCCAATTCCACAGTACCTCATAAATGTCTTGTCACCTTCATCTGCATACTTTGCAAAACCTTTAACAGGGAACTTCCAAAGACATCACAAGAAACACCCTGATAGTGGGAACACAGAATCCATTTGTGATGATTTCCCACCAGGAATTCCACCTCCAAATACCAACACCACTTCGTATCTCTGTGTTGATCGAAAAGGGTGCTGTAATTTCACAACAGTACAAGCAGCCGTGAATGCAGTTCCAGATTTTAGTGTCAAAAGAACCATTCTATGGATAAACAGTGGCATGTACTATGAGAAGGTTATGGTGCCTAAAACAAAACCCAACATTACATTTCAAGGACAAGGCTATACTTCAACCGCAATTGCATGGAACGACACCGCATTATCCGCGAATGGAACATTTTACAGTGGCTCCGTACAAGTTTTCGCCTCCAATTTCATTGCTAAGAACATAAGCTTCATGAATTTAGCACCAATGCCAAGTCCTGGAGCCGTAGGGGCACAAGCAGTAGCTATTAGGGTATCCGGAGATCAATCTGAATTTAGGGGCTGTGGATTCTTCGGAGCACAAGACACCCTTCACGATGATAAGGGTCGCCATTACTTCAAAGATTGCTATATTCAAGGCTCCATTGACTTCATATTCGGCAATGCAAGGTCCCTCTACGAGAACTGCGAAATAGTTTCTATAGCGAACCCTGTACCAGTGGGACAAAGGAGCATAAATGGTGCTGTTACAGCTCATGGTAGAGTTTCAGGTGATGAAAACACAGGGTTTGCATTTGTGAACAGTACAGTTGGAGGAAACGGTAGAATATGGTTGGGTCGAGCATGGAGACCTTATTCTCGTGTTGTCTTTGCCTTCACATCAATGTCTGATATCATTGCTCCTGAAGGTTGGAATGATTTCAACGACCCTTCCAGAGACCAGACTATCTTCTATGGAGAATATAACTGCTCAGGGTCTGGGGCTAACACGAACTTGAGGGCAGCTTATGTGCAGAAATTAAATGAAACACAAGCTTCTGCTTTCCTCAACATTTCTTTTATAGATGGCGAGCAATGGTTGGAGACTTCTAAATAA 1185 0.4262 MGPQSNLLSLLVALAALFSSLYLINPIPKFFINPIPQYLINVLSPSSAYFAKPLTGNFQRHHKKHPDSGNTESICDDFPPGIPPPNTNTTSYLCVDRKGCCNFTTVQAAVNAVPDFSVKRTILWINSGMYYEKVMVPKTKPNITFQGQGYTSTAIAWNDTALSANGTFYSGSVQVFASNFIAKNISFMNLAPMPSPGAVGAQAVAIRVSGDQSEFRGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYENCEIVSIANPVPVGQRSINGAVTAHGRVSGDENTGFAFVNSTVGGNGRIWLGRAWRPYSRVVFAFTSMSDIIAPEGWNDFNDPSRDQTIFYGEYNCSGSGANTNLRAAYVQKLNETQASAFLNISFIDGEQWLETSK 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01819 394 Gene3D - 86 394 IPR012334 -
Viun1g01819 394 FunFam Pectinesterase 87 394 - -
Viun1g01819 394 Pfam Pectinesterase 95 386 IPR000070 GO:0030599|GO:0042545
Viun1g01819 394 SUPERFAMILY Pectin lyase-like 92 391 IPR011050 -
Viun1g01819 394 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 81 391 - -
Viun1g01819 394 ProSitePatterns Pectinesterase signature 2. 241 250 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01819 Viun-Chr1 29942654 29946914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01819 64 393 Carbohydrate Esterase AT1G05310 72.121 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01819 - - gmx:100806629 697.967