Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01813 ATGAGGCCTCCGACTCTCAACATTTTCCCATCCAAGCCTATGCACGTTGAGCCATCATCATCCAAGTCCAAGGCTAACTTAGAGTTAGTTTCTCCGCAAACAAGTGGTTCAAAGAGACCATCAGAGCCGTCGATGGAGTTGGCCAACCCTCGAAACGAAGCTGCTTCGGCCCCTCAACCACCCAAAGCTGTCAAGCGAGAGAGCAATCGCAAAGGTCCAACGTCGAGTTCTGAACAAGAAGGACCAAAAACACCAGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCATATGTTCAACAGCTAGAGTCAAGTAGGGTTAGGCTTAATCAGCTGGAACAAGAGCTACAACGTGCTAGAACTCAGGGCATGTTCTTGGGTGGTGGAGGTGCACTTTTGGGAGGAGAGCAAAGCCTCCCTGTCGCTATGAATACCATTACCTCGGAGGCTGCAATGTTTGACGTGGAATATGCAAGATGGGTTGAGGAGCACCACCGCATAGTGTGTGAGCTAAGAGCTGCAGTGCAAGAGCACCTTCCTGAGAACGAGCTTAGACTCTTTGTGGACAATTGCGTGGCGCATTATGACCAAGTAATCAACCTCAAGAGCCTCGTGGCCAAAACAGACGTGTTCCATCTGGTTTCTGGCATGTGGAAAACCCCGGCTGAACGTTGCTTCATGTGGATCGGAGGATTCAGGCCTTCTGAACTCATTAAGATTATTCTGAGTCAAATTGAGCCTCTGACGGAGCAACAAATATTGGGTATATGTGGATTACAACAATCGACTCAAGAGGCAGAAGAGGCTCTCTCTCAAGGGCTAGAGGCTCTGAACCAATCTCTTTCGGACACCATAACTTCAGACTCTCTAAGCTATCCTCTCAATATGGCTAACTATATGGGACAAATGGCTGTGGCCATGAACAAGCTCTCAACTCTCGAAGGTTTCGTTAGACAGGCAGATAATCTTCGGCACCAAACCATTCACCGTCTGCATCAGCTCCTAACAACGCGTCAAGCAGCAAGGTGTTTTCTGGCCATAGCCGAGTACTTCCATCGTCTTCGAGCTCTGAGTTCATTGTGGTTGGCACGCCCTCGCGTAGAATAG 1143 0.4882 MRPPTLNIFPSKPMHVEPSSSKSKANLELVSPQTSGSKRPSEPSMELANPRNEAASAPQPPKAVKRESNRKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRVRLNQLEQELQRARTQGMFLGGGGALLGGEQSLPVAMNTITSEAAMFDVEYARWVEEHHRIVCELRAAVQEHLPENELRLFVDNCVAHYDQVINLKSLVAKTDVFHLVSGMWKTPAERCFMWIGGFRPSELIKIILSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLSDTITSDSLSYPLNMANYMGQMAVAMNKLSTLEGFVRQADNLRHQTIHRLHQLLTTRQAARCFLAIAEYFHRLRALSSLWLARPRVE 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01813 380 Gene3D - 87 137 - -
Viun1g01813 380 MobiDBLite consensus disorder prediction 1 91 - -
Viun1g01813 380 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 86 130 IPR004827 GO:0003700|GO:0006355
Viun1g01813 380 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 91 106 IPR004827 GO:0003700|GO:0006355
Viun1g01813 380 Coils Coil 107 134 - -
Viun1g01813 380 SUPERFAMILY Leucine zipper domain 88 130 IPR046347 GO:0003700|GO:0006355
Viun1g01813 380 FunFam BZIP family transcription factor 87 136 - -
Viun1g01813 380 SMART brlzneu 84 158 IPR004827 GO:0003700|GO:0006355
Viun1g01813 380 MobiDBLite consensus disorder prediction 14 42 - -
Viun1g01813 380 PANTHER TRANSCRIPTION FACTOR TGA9 13 378 - -
Viun1g01813 380 Pfam Seed dormancy control 180 254 IPR025422 GO:0006351|GO:0043565
Viun1g01813 380 Pfam bZIP transcription factor 88 123 IPR004827 GO:0003700|GO:0006355
Viun1g01813 380 ProSiteProfiles DOG1 domain profile. 162 376 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01813 Viun-Chr1 29869520 29874879 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01813 1 378 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 68.878 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Viun1g01813 DOG1 8.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01813 K14431 - gmx:100815176 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01813 1 29869520 29874879 Viun7g00361 7 2548259 2554917 PCT