Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01811 ATGGCTTCCAAGACCACCAACCCAACAACAAATAATCAATTGGAACCACTCCCACCACCTCAGCACCGTCACCCTCATCCTCATCATTATCAGTTACAACAACACCAACACCATCAAGTTCATGACCATCAAATTTCTTTTGGAATGATGCAATCTTCTTCTTCGTCTTCCTCTATCCCCGGAAATTACCTCAGAGGCAAGGATTCCGGCGCTTATGACTTGGGTGAATTGGATCAAGCGTTTTTCCTCTACCTTGATGGACAAGCAGACCCATCCACTGTTCAAGACCAAAGACAGAACTCATCATCCGGAATGAGGCCTCCGACTCTCAACATTTTCCCATCCAAGCCTATGCACGTTGAGCCATCATCATCCAAGTCCAAGGCTAACTTAGAGTTAGTTTCTCCGCAAACAAGTGGTTCAAAGAGACCATCAGAGCCGTCGATGGAGTTGGCCAACCCTCGAAACGAAGCTGCTTCGGCCCCTCAACCACCCAAAGCTGTCAAGCGAGAGAGCAATCGCAAAGGTCCAACGTCGAGTTCTGAACAAGAAGGACCAAAAACACCAGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCATATGTTCAACAGCTAGAGTCAAGTAGGGTTAGGCTTAATCAGCTGGAACAAGAGCTACAACGTGCTAGAACTCAGGGCATGTTCTTGGGTGGTGGAGGTGCACTTTTGGGAGGAGAGCAAAGCCTCCCTGTCGCTATGAATACCATTACCTCGGAGGCTGCAATGTTTGACGTGGAATATGCAAGATGGGTTGAGGAGCACCACCGCATAGTGTGTGAGCTAAGAGCTGCAGTGCAAGAGCACCTTCCTGAGAACGAGCTTAGACTCTTTGTGGACAATTGCGTGGCGCATTATGACCAAGTAATCAACCTCAAGAGCCTCGTGGCCAAAACAGACGTGTTCCATCTGGTTTCTGGCATGTGGAAAACCCCGGCTGAACGTTGCTTCATGTGGATCGGAGGATTCAGGCCTTCTGAACTCATTAAGATTATTCTGAGTCAAATTGAGCCTCTGACGGAGCAACAAATATTGGGTATATGTGGATTACAACAATCGACTCAAGAGGCAGAAGAGGCTCTCTCTCAAGGGCTAGAGGCTCTGAACCAATCTCTTTCGGACACCATAACTTCAGACTCTCTAAGCTATCCTCTCAATATGGCTAACTATATGGGACAAATGGCTGTGGCCATGAACAAGCTCTCAACTCTCGAAGGTTTCGTTAGACAGGCAGATAATCTTCGGCACCAAACCATTCACCGTCTGCATCAGCTCCTAACAACGCGTCAAGCAGCAAGGTGTTTTCTGGCCATAGCCGAGTACTTCCATCGTCTTCGAGCTCTGAGTTCATTGTGGTTGGCACGCCCTCGCGTAGAATAG 1455 0.4811 MASKTTNPTTNNQLEPLPPPQHRHPHPHHYQLQQHQHHQVHDHQISFGMMQSSSSSSSIPGNYLRGKDSGAYDLGELDQAFFLYLDGQADPSTVQDQRQNSSSGMRPPTLNIFPSKPMHVEPSSSKSKANLELVSPQTSGSKRPSEPSMELANPRNEAASAPQPPKAVKRESNRKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRVRLNQLEQELQRARTQGMFLGGGGALLGGEQSLPVAMNTITSEAAMFDVEYARWVEEHHRIVCELRAAVQEHLPENELRLFVDNCVAHYDQVINLKSLVAKTDVFHLVSGMWKTPAERCFMWIGGFRPSELIKIILSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLSDTITSDSLSYPLNMANYMGQMAVAMNKLSTLEGFVRQADNLRHQTIHRLHQLLTTRQAARCFLAIAEYFHRLRALSSLWLARPRVE 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01811 484 Pfam Seed dormancy control 284 358 IPR025422 GO:0006351|GO:0043565
Viun1g01811 484 MobiDBLite consensus disorder prediction 1 42 - -
Viun1g01811 484 FunFam BZIP family transcription factor 191 240 - -
Viun1g01811 484 Pfam bZIP transcription factor 192 227 IPR004827 GO:0003700|GO:0006355
Viun1g01811 484 SUPERFAMILY Leucine zipper domain 192 234 IPR046347 GO:0003700|GO:0006355
Viun1g01811 484 Gene3D - 191 241 - -
Viun1g01811 484 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 195 210 IPR004827 GO:0003700|GO:0006355
Viun1g01811 484 ProSiteProfiles DOG1 domain profile. 266 480 IPR025422 GO:0006351|GO:0043565
Viun1g01811 484 Coils Coil 211 238 - -
Viun1g01811 484 PANTHER TRANSCRIPTION FACTOR TGA9 101 482 - -
Viun1g01811 484 MobiDBLite consensus disorder prediction 91 195 - -
Viun1g01811 484 MobiDBLite consensus disorder prediction 91 109 - -
Viun1g01811 484 MobiDBLite consensus disorder prediction 118 146 - -
Viun1g01811 484 SMART brlzneu 188 262 IPR004827 GO:0003700|GO:0006355
Viun1g01811 484 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 190 234 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01811 Viun-Chr1 29869520 29876131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01811 61 482 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 65.011 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Viun1g01811 DOG1 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01811 K14431 - gmx:100815176 808.905