Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01802 ATGGATTCCAATTCCCGTTACCAACTTCAGCAACAACACCAACCCAATTCCGGGTTGCTTCGCTTTCGCTCTGCCCCCACCCAAGTTCTCGCCAACTTCAAACAAGGCGAAGCTTCTTCCATCAACGGCAACCCCTGGGAGGGTTCTGAACCACTTTTCAGATTCTTCAATTCCGGCGACACCCTCGATACGACATCCCCTACCGTACGAGAATTCGTGGATAACAAGGTTTCTAACGACAATAAACAACCGAAGGAGTCAACAATATCGTCGTCGTCGCCATCATTATCACCTCTGAGTCGCATGAATTCCCAGCAAGGTTATAGTACTATTAATACTTCTGTGTTACCCTCTCGGTACCCGAGGCATGACTCTTCTGTAACTGTTTCTTCATCTATGATGCTGGGTTCTGTGGGAATGGATCAGAGCGGCAAAAGCTTTAATCCCAATCTTCTCAGGCAGAGTAGCTTCCCTTCTGGCAATTTCTCTAACAGCATCTCCTTTCACAACGGGTACGATGCTATGAAAGGTGTTGAAAACTTTGGTGGTGTTAATGGCAGTGATGGTGAGCATAGAATATCTATGAACAGAATGAAGAATCACATTAGCTTCTCACCTTCTTCCTTGGGAATTTTATCACCAACCTCTAAAATGTGCACGGAGGGTCTTAAAGTAACTAGCCCCGAGGATGGTAGACATGGAGGTAGCAATGGTGATGCTCGATATTACGGCTCTGGATTCCCTTACACTTCTTGGAATGAGACGTCAAACCCCAAAAGACAGCGAAATAGTAATGATGAGTTACTTTCTGAAGCTCAGAATGGAGAGCTGGGAAATCAGGTTCATTCTCTTTCGCATCATTTGAGTTTGCCAAGAACGTCCTCGGACATGTTTGCTATGGACAACTTGCTTCAGTTTAATGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATAGCCGAAAGGGTGAGAAGAACTAGGATCAGTGAACGGATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGAAAAGCAAACCAGCACAGCAGAGATGTTGGACTTGGCTGTAGACTACATAAAGAATCTTCAGAATCAATTCAAGAATCTGAGCGAAAGAAGGGCTAAATGCAAATGTATAAACATGCAGAAACCAGAAACAGATAAAATTGCATGA 1197 0.4403 MDSNSRYQLQQQHQPNSGLLRFRSAPTQVLANFKQGEASSINGNPWEGSEPLFRFFNSGDTLDTTSPTVREFVDNKVSNDNKQPKESTISSSSPSLSPLSRMNSQQGYSTINTSVLPSRYPRHDSSVTVSSSMMLGSVGMDQSGKSFNPNLLRQSSFPSGNFSNSISFHNGYDAMKGVENFGGVNGSDGEHRISMNRMKNHISFSPSSLGILSPTSKMCTEGLKVTSPEDGRHGGSNGDARYYGSGFPYTSWNETSNPKRQRNSNDELLSEAQNGELGNQVHSLSHHLSLPRTSSDMFAMDNLLQFNDSVPCKIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPNMEKQTSTAEMLDLAVDYIKNLQNQFKNLSERRAKCKCINMQKPETDKIA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01802 398 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 320 370 IPR011598 GO:0046983
Viun1g01802 398 MobiDBLite consensus disorder prediction 74 105 - -
Viun1g01802 398 MobiDBLite consensus disorder prediction 221 240 - -
Viun1g01802 398 MobiDBLite consensus disorder prediction 1 21 - -
Viun1g01802 398 Coils Coil 360 387 - -
Viun1g01802 398 Gene3D - 322 392 IPR036638 GO:0046983
Viun1g01802 398 Pfam Helix-loop-helix DNA-binding domain 326 371 IPR011598 GO:0046983
Viun1g01802 398 MobiDBLite consensus disorder prediction 82 105 - -
Viun1g01802 398 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 65 391 - -
Viun1g01802 398 CDD bHLH_AtbHLH_like 325 378 IPR045239 -
Viun1g01802 398 FunFam Transcription factor bHLH130 family 321 390 - -
Viun1g01802 398 Coils Coil 333 353 - -
Viun1g01802 398 SMART finulus 326 376 IPR011598 GO:0046983
Viun1g01802 398 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 387 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01802 Viun-Chr1 29787150 29790140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01802 1 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 41.162 5.91e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun1g01802 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01802 - - gmx:100814652 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01802 1 29787150 29790140 Viun1g01802 1 29787150 29790140 ECH
Viun1g01802 1 29787150 29790140 Viun7g04221 7 40625989 40630596 ECH
Viun1g01802 1 29787150 29790140 Viun7g00368 7 2599049 2602247 PCT