Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01801 ATGCCAATGCATCATCTTCTTATATCACTCTTTCTCTTCTTCGTCGTTACTCCAACCGCCTCTCTCAACTCCGACGGGCTCTCCCTGCTGGCCTTGAAAGCCGCCGTGGACTCCGATCCCACCGGCGTCCTCAGCTCCTGGTCAGAAAACGACGCCACCGCATGCCACTGGCCCGGCGTGTCCTGCACCGGCGACAGAGTTACCCAACTCTCTCTCCCTGACAAGGGCCTCAGCGGTTACATTCCCTCTGAACTGGGATTTCTCAGCTCCCTCAAAAGATTGAGTCTTCCGTACAACAACTTCTCCAACGTCATTCCCCCCTCTCTCTTCAACGCCACCACCCTCATTGTCCTCGACCTCTCTCACAACTCGCTCTGCGGTTCCCTTCCCTCGCACTTTCTCTCCCTCAAGTTCCTTCGCCATTTGGACCTCTCCTCCAACTATCTCAACGGCTCCCTCCCTCCTACCCTCTCCGATCTCACTTCTCTCACCGGAACTCTCAATCTTTCTTTCAACTTCTTCTCCGGCGGGATTCCGGCCACCCTTGCTAACCTGCCTGTGGCTGTGAGCCTCGACCTCCGCAACAACAACCTCACCGGGAAAATACCCCAGGTGGGGTCCCTGCTGAACCAGGGTCCCACCGCGTTTTCTGGCAACCCTGGACTCTGTGGCTTCCCCTTGCAAACCGCGTGCCCCGAAGCGCAAAAGCCTGGGATTTTCGCCAACCCTGAAGAGGGTTTCCCTCAGAACCCCAATGCGCTCCACCCCGAAGGCTCAGACCAGAGAGTGAAACCACACGGTGGCGGCTCCGTCGCGGTTCTAGTCATCTCCGGGCTTTCAGTCGCGGTTGGAGCGGTTTCTCTATCTTTATGGGTTTTCCGGCGTCGGTGGGGCGGCGGCGAGGAGAGGAAATTGGGGGGGCAGAAGTTCGAGGGTGAGGTGGATGCGGGCGAGGGGCAAGATGGTAAATTTGTTGTGGTGGATGAAGGGTTTGAGTTGGAGTTGGAGGATTTGCTTAGGGCGTCTGCGTATGTTGTTGGGAAGAGTAGGAGTGGGATTGTGTACAAGGTGGTTGGGGTCGGAAGAGGGTCTTCCGCGGCGGCGAATGTTGTGGCTGTCCGGCGACTCAGCGAGGGTGATTCCACGTGGCGATTTAAGGAGTTTGAGTCTGAAGTGGAGGCCATCGCAAGGGTTCGTCACCCCAATGTGGTTCCGTTGAGAGCTTATTATTATGCCCATGATGAGAAGCTGCTTATCACCGATTTCATTCGCAATGGAAGCTTGCACACTGCTTTACACGCTGGGCCTTCCAATTCACTGCCACCATTGCCATGGGCGGCAAGGTTAAAAATTGTTCAAGAAGCAGCGAAGGGCTTGACGTATATACACGAGTTCAGTGGTCGCAAATATATCCATGGCAACATTAAGGCAACAAAAATCTTACTAGACGATGAGCTCCATGCATACGTGTCAGGTTTTGGACTTTCTCGCCTTGGTTTGGGTCCGCCAAAACGGAACAGCTTGAACCAGTCTTCTATAACCACTGCAATGAGTTCAAAGGTTGCAGCTTCCTTTAACCACTACCTGGCACCTGAGGTGCGCATGGCTGGTGGCAAGTTCACTCAGAAATGTGATGTGTATTCATTTGGCATTGTGCTTTTGGAAGTTCTGACGGGTAGGATGCCAGATTTTGGAGCAGAAAATGATGAGAAAGTTCTTGAGAGTTTTGTGAGGAAAGCGTTCAGGGAGGAGCAGCCACTGTCTGATATCATTGACCAAGCACTCATCCCTGAAGTTTATGCTAAAAAGCAAGTCATTGCTGCATTTCATATTGCTCTGAACTGCACCGAACTCGACCCAGAGTTGCGACCGCGAATGAAAACCGTGTCAGAGAATCTTGATCACATCAAATACAGTGAAAACCATGTATAG 1932 0.529 MPMHHLLISLFLFFVVTPTASLNSDGLSLLALKAAVDSDPTGVLSSWSENDATACHWPGVSCTGDRVTQLSLPDKGLSGYIPSELGFLSSLKRLSLPYNNFSNVIPPSLFNATTLIVLDLSHNSLCGSLPSHFLSLKFLRHLDLSSNYLNGSLPPTLSDLTSLTGTLNLSFNFFSGGIPATLANLPVAVSLDLRNNNLTGKIPQVGSLLNQGPTAFSGNPGLCGFPLQTACPEAQKPGIFANPEEGFPQNPNALHPEGSDQRVKPHGGGSVAVLVISGLSVAVGAVSLSLWVFRRRWGGGEERKLGGQKFEGEVDAGEGQDGKFVVVDEGFELELEDLLRASAYVVGKSRSGIVYKVVGVGRGSSAAANVVAVRRLSEGDSTWRFKEFESEVEAIARVRHPNVVPLRAYYYAHDEKLLITDFIRNGSLHTALHAGPSNSLPPLPWAARLKIVQEAAKGLTYIHEFSGRKYIHGNIKATKILLDDELHAYVSGFGLSRLGLGPPKRNSLNQSSITTAMSSKVAASFNHYLAPEVRMAGGKFTQKCDVYSFGIVLLEVLTGRMPDFGAENDEKVLESFVRKAFREEQPLSDIIDQALIPEVYAKKQVIAAFHIALNCTELDPELRPRMKTVSENLDHIKYSENHV 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01801 643 FunFam Leucine-rich repeat receptor-like kinase 27 139 - -
Viun1g01801 643 Gene3D Transferase(Phosphotransferase) domain 1 423 643 - -
Viun1g01801 643 Pfam Leucine rich repeat 90 149 IPR001611 GO:0005515
Viun1g01801 643 SUPERFAMILY Protein kinase-like (PK-like) 345 637 IPR011009 -
Viun1g01801 643 Pfam Protein tyrosine and serine/threonine kinase 346 633 IPR001245 GO:0004672|GO:0006468
Viun1g01801 643 ProSiteProfiles Protein kinase domain profile. 340 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01801 643 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Viun1g01801 643 FunFam Leucine-rich repeat receptor-like protein kinase 140 233 - -
Viun1g01801 643 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 637 IPR046959 -
Viun1g01801 643 Gene3D Ribonuclease Inhibitor 137 233 IPR032675 -
Viun1g01801 643 MobiDBLite consensus disorder prediction 243 262 - -
Viun1g01801 643 SUPERFAMILY L domain-like 25 228 - -
Viun1g01801 643 Gene3D Ribonuclease Inhibitor 27 136 IPR032675 -
Viun1g01801 643 Gene3D Phosphorylase Kinase; domain 1 320 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01801 Viun-Chr1 29771669 29775551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01801 22 637 Receptor kinase-like Gene Family AT3G57830 57.680 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun1g01801 PK_Tyr_Ser-Thr 2.5e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01801 - - gmx:100796011 1073.92