Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01797 ATGGAGCAAGCTCCGGTAGGATTACGCGGATCCGTGCACGACGGCGCCACACTTGAGTCAATTCAATTCAACGAAGAAATTCAGGGAATCATGGCGCCGGCACCGGCGCCGGAAAACGCCAGCTCATTCACTGCACTGCTTGAGCTTCCACCGACGCAGGCGGTGGAGCTCCTTCACTCGCCGGACTCTGATGGAGCTCGGAAGCCGCCTAATTGCCACATCAGTACTAATCACAAACCCTATTTGCTCAACTCTTTCAGTGGCAATTTGACCTTTCCTTCCAACGCCGCCTTAATTGAACGCGCCGCCAAGTTCTCCGTGTTTGCCGGTGAAAACTCAACGTCGCCAGGGGAGGTGTGTGTGCTTCCTGCCGGGTCTGGTTCGAATTTGGATAGGGTGAAAAACGAGCCGCAAGAGACTGATTCGAACCCGTGCTCCACACAAGGGTGCGTTTCGGATCCTGCGGTTGAGAACAAGAACGAGAAGACGACCGTGAAGAGAAAGGAGCGAGAGAAGAAAGTAACGGTTAAAGGATCGTCGAAGAAGAACAAGAGTGTGGCTGATGAGACCTCCTGTGATGGTGAGAAGCTTCCCTACGTCCACGTTCGAGTTCGTCGAGGTCAAGCCACAGATAGCCATAGCTTGGCAGAAAGGGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGCGACAAGATATCAGGAACGGCAATGGTTCTAGATGAAATCATCAATCATGTGCAATCTCTACAGCGTCAAGTGGAGATTTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAGCCTTGACAGCTTATTGCCTACTGATGGGGCATCTCTAATGGATAGTAACATACCTAGCATGATGACACCTCTCATGTGGCCAGAAATCCCAGTCAATGGCAACCGACAGCATTACCAACAACAGTGGCAATTTGATGCATTCCACCAATCGCTATGGGAGAGGGAAGAAGTCAACCACAATTTCATGACTCCGGAAAACTCACTTTTGAGTTATGACTCGTCGGCGAACTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTTTGA 1107 0.5005 MEQAPVGLRGSVHDGATLESIQFNEEIQGIMAPAPAPENASSFTALLELPPTQAVELLHSPDSDGARKPPNCHISTNHKPYLLNSFSGNLTFPSNAALIERAAKFSVFAGENSTSPGEVCVLPAGSGSNLDRVKNEPQETDSNPCSTQGCVSDPAVENKNEKTTVKRKEREKKVTVKGSSKKNKSVADETSCDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTAMVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDSLLPTDGASLMDSNIPSMMTPLMWPEIPVNGNRQHYQQQWQFDAFHQSLWEREEVNHNFMTPENSLLSYDSSANSASLHSNQLKMEL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01797 368 Coils Coil 248 268 - -
Viun1g01797 368 FunFam transcription factor bHLH48-like isoform X1 205 277 - -
Viun1g01797 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 258 IPR011598 GO:0046983
Viun1g01797 368 Pfam Helix-loop-helix DNA-binding domain 212 259 IPR011598 GO:0046983
Viun1g01797 368 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 106 352 IPR024097 GO:0006355
Viun1g01797 368 CDD bHLH_AtBPE_like 198 283 - -
Viun1g01797 368 Gene3D - 205 277 IPR036638 GO:0046983
Viun1g01797 368 MobiDBLite consensus disorder prediction 129 190 - -
Viun1g01797 368 SMART finulus 214 264 IPR011598 GO:0046983
Viun1g01797 368 MobiDBLite consensus disorder prediction 139 158 - -
Viun1g01797 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 277 IPR036638 GO:0046983
Viun1g01797 368 MobiDBLite consensus disorder prediction 159 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01797 Viun-Chr1 29726172 29735908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01797 7 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 51.036 2.59e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun1g01797 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01797 - - vun:114168708 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01797 1 29726172 29735908 Viun1g01797 1 29726172 29735908 ECH