Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01786 ATGTTTCCGACCAATTTTACATATGTTCAGCCTAATTCTGCTGCTTCTGAAGGATCCTCAGATTTGGATCATAGGGATGAGATGGACACAGAGTCTCATACATATGACGGAGTTCGAAAAGTCACAGGTAAATCAATCTATATAGCTGAAGTACGTGACAATGATGAAACCAAGGGCGAGCAATTAATACATCTTGGTAAATTTGACAAAGACGTAAATGCAGCAAGAGCTCATGATATGGTGGCTCTGAAACTTGGGGGATCCGGTGTAAAAACAAACTTTCCAGAAACTCAATACAAGTCAGCACTGGAGGCTATGACTGATATGTCAAAAACCGAAGTTGTGGATTCTGTCAGAATGTTGAGTTTCACTTTTACCAGGGCCATCTCCATTTATCGTGGAGTCTCCAGAGATTTCTCTACTGGGAAATGGCAAGCTGATCTTGATGAAGGCAACGACAATCGCATCTTCCTTGGATTATTCGAATCAGAAGAGGAAGCAGCTAGGGCTTATGATATTGAGAGCATAAAGTTGAAAGGGCTCAAAGCCATTACTAATTTCAGTATCAGGTTTTATAACGTTGATGCCATTTTGCTTGGAGAGACTGATCCTGAAAAAGTGATGTATCAGCCACAATTCACTGTCCCTTTGGAAGCAATGCAGGCTTTTGATGAAGTGCTTTATAACATCACTGGCCAAGGGAATGTGAACAGGGAGGGAGTGCAAGAATTTCAAATGTCAACAGTGTCAGGAAACACAGAAGAACATGCAAATTCTACAAATGTACCCTTACAAAGAGAAACTGATTCTACAAATGTGGTGAATGGAAGTGAAGAGGGAAGCACGCCCAGGGAAAAGTTCGAAGCTTATATGAAATTCATCAAGAGACAAACTTGA 897 0.4091 MFPTNFTYVQPNSAASEGSSDLDHRDEMDTESHTYDGVRKVTGKSIYIAEVRDNDETKGEQLIHLGKFDKDVNAARAHDMVALKLGGSGVKTNFPETQYKSALEAMTDMSKTEVVDSVRMLSFTFTRAISIYRGVSRDFSTGKWQADLDEGNDNRIFLGLFESEEEAARAYDIESIKLKGLKAITNFSIRFYNVDAILLGETDPEKVMYQPQFTVPLEAMQAFDEVLYNITGQGNVNREGVQEFQMSTVSGNTEEHANSTNVPLQRETDSTNVVNGSEEGSTPREKFEAYMKFIKRQT 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01786 298 MobiDBLite consensus disorder prediction 248 285 - -
Viun1g01786 298 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 30 211 - -
Viun1g01786 298 SUPERFAMILY DNA-binding domain 130 189 IPR016177 GO:0003677
Viun1g01786 298 ProSiteProfiles AP2/ERF domain profile. 131 188 IPR001471 GO:0003700|GO:0006355
Viun1g01786 298 MobiDBLite consensus disorder prediction 248 279 - -
Viun1g01786 298 ProSiteProfiles AP2/ERF domain profile. 34 95 IPR001471 GO:0003700|GO:0006355
Viun1g01786 298 MobiDBLite consensus disorder prediction 19 33 - -
Viun1g01786 298 Pfam AP2 domain 131 172 IPR001471 GO:0003700|GO:0006355
Viun1g01786 298 SMART rav1_2 131 194 IPR001471 GO:0003700|GO:0006355
Viun1g01786 298 SMART rav1_2 34 101 IPR001471 GO:0003700|GO:0006355
Viun1g01786 298 MobiDBLite consensus disorder prediction 1 33 - -
Viun1g01786 298 Gene3D AP2/ERF domain 131 191 IPR036955 GO:0003700|GO:0006355
Viun1g01786 298 Gene3D AP2/ERF domain 34 97 IPR036955 GO:0003700|GO:0006355
Viun1g01786 298 SUPERFAMILY DNA-binding domain 34 96 IPR016177 GO:0003677
Viun1g01786 298 CDD AP2 130 187 IPR001471 GO:0003700|GO:0006355
Viun1g01786 298 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01786 Viun-Chr1 29638798 29643587 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01786 35 204 AP2-EREBP Transcription Factor Family AT1G51190 44.068 2.86e-39 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun1g01786 AP2 3.6e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01786 K09285 - ccaj:109797991 284.263