Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01785 ATGGAAGAACCATACTCCATGCTCCAGAATGCACCAACTATGGAACCAACCATGTTAAACACTCAAGAAGGCACACTCAGGAATTGGAATCAAGACCCACTGCTACTCCATCAACACCTTCTCACTCCACAAATGGAAAGCACTTCTCAAGGCTCAATCAACAATTCCACCTGCAGTTCGTCCCTTCAATATCATGTGTTATCCCTTTTAGAGGGAATAATTAACGAAAAACACATAGAAGAAACCCTAATCCAATCCAAGCTTTTGTCGAGCAATGTTGGGTCCATTGCTGCCACAGCAACAGCAACAGCAACGATTATCAATGAAAGGGAACGAAATGATTGTGGAGAGAATGATCGAAGACAGCACGAAACGTGTCTTGATTTGGTTGCCAAAACAATTGGTAGCAAGAGCTCTGTGTATCGAGGAGTAGTCAAGTGCAACGAAGATCGTTTTGAAGCATTTGTGTGGGATAAGAGCGATCCAGGGGAAAAAGGAAGAACAGTTTACATTGGTGCTTATTCAACTGAAGTTGACGCCGCCAAAGCTCATGATTTGGTGTCAATCAGAATAGGGGGCTTAAAAGCATTAACCAATTTTCATGTGAGGTGTTATTCCAAGGACATGGATGAAATGAGAAGAATGAGCAAATGGGACTATATTTGTGCTGTTAGAGGGTTGGGCAAGGGCTATACAGATGGTGATTCCCCTTTCCGTGGCGTCTACAGGGTTCCGACAAGCAGAAAATGGGAAGCAAGGCTGGGTCGTGAGGGGTCACCAACCATACACTTGGGAACTTATTACACTGCAGAGGATGCAGCGAGAGCTTATGACATTATATCAATAAAACTGAAGGGAGGGGAAGCAATTACCAACTTTGACTGGAATTCCTATGAAACTGAGGGCATAATGGAGAGTGTGATTTCTCAATCAACGGACGGATCGATCATTCTGCAGAAAGAAGAAAAAAACAAAGAAACCGAAGCATCTCCTCAAAACAGCTCTTCAGTTCAATGCCATTCTCAACCACCCAGCATCCCATCCATTTGTCGTTGCTGCCACAACCAAATTCTCACACCAACCAACCCTCATGCTCTTGGTGCCATTGCTGATCCTGCTGGAAACAGTGGAAGTAACAATTCAATTGTTAACGATGCTGTACAGTTTCGAAACGAGAATGTAACACAGCAACAGCCACGCCCACTTCAGACTCAGAGGCAAGTCTGTTTCAACGATGCCTCTAATCAGAACCTTGTCAACAACAATCAGCTTCCAAATCACAATGCAGCACAGCAACAGTCACTTCAGACTCCAATGCAAGTGAGTTTCAACAATGGCTTTAATCAGACCCTTGTGAACAATAACTACAGCAACAACACCAACACCAACACCAACACCAACACCAACAACCAGTTTCTGCCTCAGGGTTCTAACCTTGCTTTGCCTGCTACTGGGATCCGAAATCTGGAGTTAGAAAAGTGCGTCCGTTTCCCTGATTGGAGATCAGGTTTCGGAAAGAAGCTACTTGGAGGGAACTTGGAATTGGAATCTTTAAGCAACATTGCTGCCCTGAGTCTGCAAGCTCTACCTCAAGTCACGCTGAATGGTAGCACAGGAGCAACACAGCTACACTCACCTGCATTGCAGCAAAGTTATGAGCATCAGAACTTGAACTCCTGCTCCTCTGATAGTTTTCAGAATCCTGTTTCTGAACCAAACAACAACGGCTTCCAAAGCCAACTTGATTTGGACATGATAGATTATCTCAACAGGTCTTACATAGAAGACACTGATTTCACATGTGATTATGACATGTTTTCAGCCTTGAATGGGGGTAGATAA 1842 0.4408 MEEPYSMLQNAPTMEPTMLNTQEGTLRNWNQDPLLLHQHLLTPQMESTSQGSINNSTCSSSLQYHVLSLLEGIINEKHIEETLIQSKLLSSNVGSIAATATATATIINERERNDCGENDRRQHETCLDLVAKTIGSKSSVYRGVVKCNEDRFEAFVWDKSDPGEKGRTVYIGAYSTEVDAAKAHDLVSIRIGGLKALTNFHVRCYSKDMDEMRRMSKWDYICAVRGLGKGYTDGDSPFRGVYRVPTSRKWEARLGREGSPTIHLGTYYTAEDAARAYDIISIKLKGGEAITNFDWNSYETEGIMESVISQSTDGSIILQKEEKNKETEASPQNSSSVQCHSQPPSIPSICRCCHNQILTPTNPHALGAIADPAGNSGSNNSIVNDAVQFRNENVTQQQPRPLQTQRQVCFNDASNQNLVNNNQLPNHNAAQQQSLQTPMQVSFNNGFNQTLVNNNYSNNTNTNTNTNTNNQFLPQGSNLALPATGIRNLELEKCVRFPDWRSGFGKKLLGGNLELESLSNIAALSLQALPQVTLNGSTGATQLHSPALQQSYEHQNLNSCSSDSFQNPVSEPNNNGFQSQLDLDMIDYLNRSYIEDTDFTCDYDMFSALNGGR 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01785 613 SMART rav1_2 237 300 IPR001471 GO:0003700|GO:0006355
Viun1g01785 613 SMART rav1_2 140 207 IPR001471 GO:0003700|GO:0006355
Viun1g01785 613 CDD AP2 139 200 IPR001471 GO:0003700|GO:0006355
Viun1g01785 613 ProSiteProfiles AP2/ERF domain profile. 237 294 IPR001471 GO:0003700|GO:0006355
Viun1g01785 613 ProSiteProfiles AP2/ERF domain profile. 140 201 IPR001471 GO:0003700|GO:0006355
Viun1g01785 613 SUPERFAMILY DNA-binding domain 139 202 IPR016177 GO:0003677
Viun1g01785 613 CDD AP2 238 296 IPR001471 GO:0003700|GO:0006355
Viun1g01785 613 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 105 397 - -
Viun1g01785 613 SUPERFAMILY DNA-binding domain 237 295 IPR016177 GO:0003677
Viun1g01785 613 Gene3D AP2/ERF domain 140 203 IPR036955 GO:0003700|GO:0006355
Viun1g01785 613 Gene3D AP2/ERF domain 237 295 IPR036955 GO:0003700|GO:0006355
Viun1g01785 613 MobiDBLite consensus disorder prediction 456 475 - -
Viun1g01785 613 Pfam AP2 domain 238 286 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01785 Viun-Chr1 29630077 29633757 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01785 57 306 AP2-EREBP Transcription Factor Family AT1G51190 32.222 1.10e-39 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun1g01785 AP2 1.5e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01785 - K09285 pvu:PHAVU_001G137500g 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01785 1 29630077 29633757 Viun1g01785 1 29630077 29633757 ECH