Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01784 ATGGCCACTACTACATTCTGTACATACCTATTCCTTCTCTCTGTGTCCCTTTCAATCTTCGATCTCAGTTCATCTTCTTCAGAAGGGGACACCCTTCTCTCCTTCAAGGCCTCCATTGAAGACTCTAAGAAGGCCTTGTCTACCTGGTCCAACACTTCATCAAACCATTACTGTAACTGGACTGGAATAACCTGTTCCACCACACCTTTACTCTCTGTAATTTCTATCAATCTTCAGAGCTTGAACCTTTCTGGGGATATCTCATCTTCCATTTGTGACCTTCCACATCTGTCTTATCTAAACCTTGCTGATAACATCTTCAACCAGCCCATCCCTCTTCACCTCTCTGAGTGTGCTTCCTTGGAGACTTTGAATCTCAGTACCAACCTCATATGGGGCACTATCCCATCTCAGATTTCTCAGTTTGCTTCCTTGAGAGTGCTTGATTTGGGAAGAAACCACATAGAAGGAAAAATCCCTGAGAGCTTAGGCTCCTTGAAGAACCTCCAAGTCCTCAACATGGGAAGCAACTTGCTTTCAGGCACTGTGCCTGCTGTCTTTGGCAATCTAACTAAACTTGAAGTTCTTGATTTGTCTCAGAATCCTTACTTGGTGAGTGAGATTCCAGAGGATATCGGCGACCTTGAAAATCTACAGCAGCTTATGTTGCAAAGCTCTTCTTTTCAAGGCAAAATTCCAGATTCTCTGGTGGGCCTGGTTAGTTTGACCCATTTAGATCTCTCTGAGAACAACCTAACAGGTGGGGTTCCTCAGGCTCTACCATCTTCTCTCAAGAACCTGGTTTCGTTAGATGTTTCACAAAACAAGCTTTTGGGGCCATTTCCAAGTGGCATCTGCAAAGGAGAAGGCCTTGTAAACCTCTGTCTCCATTCAAATGCCTTCAATGGTTCAATACCCAGCTCCATTGATGAATGTAAGAGTCTTGAGAGATTCCAAGTCCAGAACAATGCCTTCTCTGGAGATTTCCCCGCTGCCTTGTGGTCATTACCCAAAATCAAACTCATAAGAGTTGAAAACAACAGATTCTCAGGACAAATACCTGAGTCAATTTCAGGAGCTGTTCAGTTGGAGCAAGTTCAGCTCGACAACAACAGCTTTGCTGGTAAAATTCCTCAAGGTCTTGGCTTTGTCAAGAGCTTATACAGATTTTCTGCTTCTCTCAACCGTTTCGATGGTGAACTTCCTCCAAACTTTTGTGACTCTCCTGTTATGAGCATAGTAAATCTCTCCCACAATTCTCTTTCTGGTCAAATACCAGCGCTGAAAAAATGCAGGAAACTAGTTTCATTGTCTTTGGCCGATAACAGTCTAACCGGAGAAATCCCCTCTTCTCTTGCCGAGCTTCCTGTACTCACTTACCTTGATCTTTCAGATAACAATCTCACTGGTTTAATCCCACAAGGACTTCAGAACTTGAAGCTTGCTCTTTTCAATGTCTCCTACAATCAGTTATCGGGTAAAGTACCATACTCCTTGATTTCTGGTCTCCCTGCCTCGTTTTTGGACGGAAACCCTGGTCTTTGTGGCCCTGGATTGCCTAACTCTTGTTCTGATGACATGCCAAGACGCCACATTGGTGGCATTACAACCTTAGCATGTGCTCTCATCAGTTTAGCCTTTGTTGTTGGAACTGGCATTGTTGTTGGTGGTTTTATTTTGTATAGGAGATATTCCAAGGGGAATCAAGTAGGGGTCTGGCGCTCAGTGTTCTTTTATCCTCTCAGGATTACCGAGCATGATCTACTTGTAGGGATGAATGAGAAAAGCTCAATGGGAAATGGTGGGTTTTTTGGTAGAGTTTATGTCGTGAGTTTACCTAGTGGTGAACTAATAGCTGTGAAGAAGTTAGTCAATTTTGGAAGCCAGTCCTCCAAAAGTTTGAAAGCGGAGGTGAAGACTCTGGCAAAAATTAGGCACAAGAATGTTGTTAAAATTCTGGGTTTCTGCCACTCCGATGAGTCGGTGTTTCTCATTTATGAGTACTTGCATGGAGGGAGCTTAGGGGATTTGATTTCTGGTCAGAATTTTCAGCTGCAGTGGGTGGTTCGATTAAAAATTGCCATTGGAGTTGCTCAAGGGCTGGCATATCTTCACAAGGATTATGTCCCTCACTTGCTTCACAGAAATGTCAAGTCAAGTAACATTTTGTTGGATGCAAATTTCGAGCCAAAGCTCACAGATTTTGCTCTTGATCGAGTTGTGGGAGAAGCTTCATTTCAATCAATTTTGAACTCTGAAGCAGCATCTTCATGTTACATCGCACCAGAAAATGGTTACAGTAAGAAAGCATCTGAACAATTGGACATCTACAGCTTTGGCGTGGTACTACTGGAGCTAGTGAGTGGTAGGCAAGCAGAAGAAACGGAGTCAAGTGACTCGGTTGACATTGTGAAGTGGGTTAGGAGGAAAGTGAACATCGCTAATGGGGTGCATCAAGTTCTTGACCCAAAAATATCAAACACTTTTCACCAAGAGATGATTGGAGCTTTAGACATTGCACTTCGTTGCACTTCTGTGGTGCCTGAGAAAAGACCATCCATGGTAGAAGTTGTTAGAAGCCTTCAATCCCTGGAGTCAAGAAGTTGCATTGCAAATTTGCATGAACCAAATGAGGAATCCTCACCAGTCTGA 2652 0.434 MATTTFCTYLFLLSVSLSIFDLSSSSSEGDTLLSFKASIEDSKKALSTWSNTSSNHYCNWTGITCSTTPLLSVISINLQSLNLSGDISSSICDLPHLSYLNLADNIFNQPIPLHLSECASLETLNLSTNLIWGTIPSQISQFASLRVLDLGRNHIEGKIPESLGSLKNLQVLNMGSNLLSGTVPAVFGNLTKLEVLDLSQNPYLVSEIPEDIGDLENLQQLMLQSSSFQGKIPDSLVGLVSLTHLDLSENNLTGGVPQALPSSLKNLVSLDVSQNKLLGPFPSGICKGEGLVNLCLHSNAFNGSIPSSIDECKSLERFQVQNNAFSGDFPAALWSLPKIKLIRVENNRFSGQIPESISGAVQLEQVQLDNNSFAGKIPQGLGFVKSLYRFSASLNRFDGELPPNFCDSPVMSIVNLSHNSLSGQIPALKKCRKLVSLSLADNSLTGEIPSSLAELPVLTYLDLSDNNLTGLIPQGLQNLKLALFNVSYNQLSGKVPYSLISGLPASFLDGNPGLCGPGLPNSCSDDMPRRHIGGITTLACALISLAFVVGTGIVVGGFILYRRYSKGNQVGVWRSVFFYPLRITEHDLLVGMNEKSSMGNGGFFGRVYVVSLPSGELIAVKKLVNFGSQSSKSLKAEVKTLAKIRHKNVVKILGFCHSDESVFLIYEYLHGGSLGDLISGQNFQLQWVVRLKIAIGVAQGLAYLHKDYVPHLLHRNVKSSNILLDANFEPKLTDFALDRVVGEASFQSILNSEAASSCYIAPENGYSKKASEQLDIYSFGVVLLELVSGRQAEETESSDSVDIVKWVRRKVNIANGVHQVLDPKISNTFHQEMIGALDIALRCTSVVPEKRPSMVEVVRSLQSLESRSCIANLHEPNEESSPV 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01784 883 Pfam Leucine rich repeat 217 277 IPR001611 GO:0005515
Viun1g01784 883 Pfam Leucine rich repeat 144 202 IPR001611 GO:0005515
Viun1g01784 883 Pfam Leucine rich repeat 432 491 IPR001611 GO:0005515
Viun1g01784 883 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 669 869 - -
Viun1g01784 883 SMART LRR_typ_2 166 189 IPR003591 -
Viun1g01784 883 SMART LRR_typ_2 190 215 IPR003591 -
Viun1g01784 883 SMART LRR_typ_2 455 478 IPR003591 -
Viun1g01784 883 SMART LRR_typ_2 264 288 IPR003591 -
Viun1g01784 883 SMART LRR_typ_2 239 262 IPR003591 -
Viun1g01784 883 SMART LRR_typ_2 142 165 IPR003591 -
Viun1g01784 883 Gene3D Ribonuclease Inhibitor 261 526 IPR032675 -
Viun1g01784 883 SUPERFAMILY Protein kinase-like (PK-like) 601 861 IPR011009 -
Viun1g01784 883 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 263 526 - -
Viun1g01784 883 FunFam Leucine-rich repeat family protein 27 184 - -
Viun1g01784 883 SUPERFAMILY L domain-like 206 519 - -
Viun1g01784 883 ProSiteProfiles Protein kinase domain profile. 593 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01784 883 FunFam - 587 668 - -
Viun1g01784 883 Gene3D Transferase(Phosphotransferase) domain 1 669 878 - -
Viun1g01784 883 Gene3D Ribonuclease Inhibitor 24 204 IPR032675 -
Viun1g01784 883 SUPERFAMILY L domain-like 26 302 - -
Viun1g01784 883 Gene3D Ribonuclease Inhibitor 205 260 IPR032675 -
Viun1g01784 883 PRINTS Leucine-rich repeat signature 242 255 - -
Viun1g01784 883 PRINTS Leucine-rich repeat signature 264 277 - -
Viun1g01784 883 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Viun1g01784 883 Pfam Protein kinase domain 594 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01784 883 Gene3D Phosphorylase Kinase; domain 1 586 668 - -
Viun1g01784 883 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01784 Viun-Chr1 29595447 29598852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01784 32 864 Receptor kinase-like Gene Family AT5G06940 64.558 0.0 1074
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun1g01784 Pkinase 5.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01784 - - gmx:100794428 1525.76