Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01783 ATGACGCAGAAGAAGAAAGCTAGGGTTTCTGACGACGAGGAAATGGATGTGCAGGGAGATGAAACCAGCCTCTACCAGGTTCTTGGTGTGGAGAGAACCGCGTCTCAGCAGGAAATAAAGAAGGCTTATTACAAATTGGCGTTGAGGCTTCATCCAGATAAGAACCCTGGTGATGAGGAAGCTAAAGAGAAATTTCAGCAATTGCAGAAGGTGATATCGATTCTGGGGGATGAAGAGAAGAGGGCGCTATATGATCAGACTGGATGTGTTGATGATGATGACCTTGCTGGAGATGTTCGGAATCTTCAAGAGTTCTTCAGAACAATGTACAAGAAGGTCACGGAAGCTGATATTGAAGAGTTTGAAGCGAATTATAGGGGATCTGACTCTGAAAAGAATGATTTGATTGATTTGTACAAGAAGTGCAAGGGTAACATGAATAGGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAATTTGACTCGCACCGATTCAAAGATATTCTTGATGAGGCTATAGCTGCTGGAGAACTAAAGACAACAAAAGCCTACCAGAAATGGGCTAAGGAAATATCTGAAACCAAACCGCCTCCAAATCCTTTGAAGAGGGAAAAGTCTAATAAGCAGTCAGAAACAGATCTATATGCAATGATAGCACAACGCCAAAACGAGAGGAAAGGCCAGTTTGATTCAATGTTCTCATCTTTAGTTTCAAAATATGGTGGAGGTGATATGCCGGAACCCTCCGAAGAGGAGTTTGAAGCTACACGGAGAAAGCTAGAAACCGGTAGATCCTCTAAAAAGTCAAAACAATCCAAGCGAAAGTAA 828 0.4203 MTQKKKARVSDDEEMDVQGDETSLYQVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTGCVDDDDLAGDVRNLQEFFRTMYKKVTEADIEEFEANYRGSDSEKNDLIDLYKKCKGNMNRLFCSMLCSDPKFDSHRFKDILDEAIAAGELKTTKAYQKWAKEISETKPPPNPLKREKSNKQSETDLYAMIAQRQNERKGQFDSMFSSLVSKYGGGDMPEPSEEEFEATRRKLETGRSSKKSKQSKRK 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01783 275 CDD DnaJ 25 77 IPR001623 -
Viun1g01783 275 ProSiteProfiles dnaJ domain profile. 23 88 IPR001623 -
Viun1g01783 275 MobiDBLite consensus disorder prediction 196 210 - -
Viun1g01783 275 PRINTS DnaJ domain signature 80 99 IPR001623 -
Viun1g01783 275 PRINTS DnaJ domain signature 25 43 IPR001623 -
Viun1g01783 275 PRINTS DnaJ domain signature 60 80 IPR001623 -
Viun1g01783 275 PRINTS DnaJ domain signature 43 58 IPR001623 -
Viun1g01783 275 MobiDBLite consensus disorder prediction 237 275 - -
Viun1g01783 275 Pfam DnaJ domain 24 85 IPR001623 -
Viun1g01783 275 MobiDBLite consensus disorder prediction 190 212 - -
Viun1g01783 275 SMART dnaj_3 22 80 IPR001623 -
Viun1g01783 275 SUPERFAMILY Chaperone J-domain 21 94 IPR036869 -
Viun1g01783 275 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 14 271 IPR042977 -
Viun1g01783 275 Gene3D DnaJ domain 7 99 IPR036869 -
Viun1g01783 275 MobiDBLite consensus disorder prediction 250 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01783 Viun-Chr1 29581676 29584140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01783 25 85 C2H2 Transcription Factor Family AT1G74250 39.394 3.83e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01783 K09529 - gmx:100793909 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01783 1 29581676 29584140 Viun1g01783 1 29581676 29584140 ECH
Viun1g01783 1 29581676 29584140 Viun7g00385 7 2717397 2720395 PCT