Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01782 ATGGAGACAGAGAACGGTGACACCAAGTCCAAAAAGATGGAAGACTATGAAGTGATAGAGCAAATTGGAAGAGGGGCTTTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCCGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGGTTGGCCAAACAGACAGAGAAGTTCAAACGTACTGCACACCAAGAGATGAACCTGATTGCAAAGCTGAATAACCCATACATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACCACATATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCAGATAACATAAAGAAAGCTCGAGGGTCATTTTTTCCTGAGGAGAAAGTCTGCAAATGGCTGACTCAGTTGTTGATAGCCGTTGACTACTTGCACTCTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAACAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGACCTTACTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTTGCTGATATACCTTATGGTTATAAATCAGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGGACATCAACCGGCATTTCGTGCTCCAGACATGGCTGGACTTATCAATAAAATAAACAGATCCTGCATTTCTCCACTGCCTATTGTTTATTCTTCGACACTGAAACAACTTATCAAGAGCATGCTTAGAAAAAATCCAGAGCACAGGCCAACCGCAGCTGAATTGTTAAGGCATCCACTTTTACAACCTTATGTTCTTCGTTGTCATAATGCATCCTCTAATATTCTTCCAGTATATCCCATAGTTAATTCAAAGGATAAAACAAGAAGATCTAATAAATCTAATGGTGGCAAGGACCATAAGGAAAAAGAAGCAAGCTTAGTAAATCGTTTGGAACGGATTCATCCAATTGAGGGAAATGGAGATACACACGTAAGCAATCTTCCTAATGATGCTGTTACAATCTCAACCAGTGCAGAAGACAACATGGAGACCAGGATGGTTGATCTTACCAGCTACATAGTGGAATCTTCTACTAGTATTAGTGACTCAAAAGATGGGTCAACAACATCTGAATCAACTATTTGCAGTGTGTGCAAGGAGGACTTCAAAGGTAGACCTCCAAGGGAAACGACTAACAACGAAATCTCTTTAAAGAGTTCACAAGAATCACTGCATGAGGAACAAATATATGCTGCTAAACATTTTCATAAATTAGAAGATGGCAGCGTTGATGCAGTGACCCCAGAAGTTGAAGACGCTTCTTGCAATGAAGGTTTGAACAATGCTGAAGCACCGAGGGAAGATTCGAGCCATGACATCTCTGGTAAATCAACAATGTCCAGTGAAGGCAGTAGCAGCAGTGATAAAGATAAGTCCATCAATGAGGAAAAGCCATCACTAACTGTGAATCCTATTAGGGTGGAAAATGATACCGAATCTGGAAACCACTTGAATGTATTTACAGAAGGCTCACATATGAACGGCTTGACATCTGATTGTAATGATGCACTTCTAGTTAAGGTTGATGACACAGCTAACAGACACATTCTCTCCACGCATAAAGATGGTAGCACGGTGGAGGTTGACCAGACAAGTGGCGTTGCATTGAGTGTAATAACAGAAGTCGATGGTGATGAGACAAATCTGTTGGATAGTCCCTGCCAACAAAGAGCTGATGCTCTGGAATCTCTGCTAGAATTATGTGCTCAGCTACTTAAGCAAGATAAACTTGAAGAGCTTGCTGGGGTTCTGAGACCATTTGGAAAAGAAGCTGTATCATCAAGAGAAACAGCAATATGGCTGGCAAAAAGCCTCATATCTGCACAAAAATTTAATCCTCAGATCTAG 1917 0.4158 METENGDTKSKKMEDYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIITGYCEGGDMADNIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLTSSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAGHQPAFRAPDMAGLINKINRSCISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNILPVYPIVNSKDKTRRSNKSNGGKDHKEKEASLVNRLERIHPIEGNGDTHVSNLPNDAVTISTSAEDNMETRMVDLTSYIVESSTSISDSKDGSTTSESTICSVCKEDFKGRPPRETTNNEISLKSSQESLHEEQIYAAKHFHKLEDGSVDAVTPEVEDASCNEGLNNAEAPREDSSHDISGKSTMSSEGSSSSDKDKSINEEKPSLTVNPIRVENDTESGNHLNVFTEGSHMNGLTSDCNDALLVKVDDTANRHILSTHKDGSTVEVDQTSGVALSVITEVDGDETNLLDSPCQQRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLAKSLISAQKFNPQI 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01782 638 CDD STKc_Nek 15 270 - -
Viun1g01782 638 SMART serkin_6 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01782 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Viun1g01782 638 MobiDBLite consensus disorder prediction 446 495 - -
Viun1g01782 638 ProSiteProfiles Protein kinase domain profile. 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01782 638 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 13 589 - -
Viun1g01782 638 FunFam serine/threonine-protein kinase Nek6 isoform X2 96 284 - -
Viun1g01782 638 SUPERFAMILY Protein kinase-like (PK-like) 13 300 IPR011009 -
Viun1g01782 638 MobiDBLite consensus disorder prediction 391 412 - -
Viun1g01782 638 FunFam Serine/threonine-protein kinase Nek6 1 95 - -
Viun1g01782 638 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01782 638 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Viun1g01782 638 Gene3D Transferase(Phosphotransferase) domain 1 98 326 - -
Viun1g01782 638 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Viun1g01782 638 MobiDBLite consensus disorder prediction 295 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01782 Viun-Chr1 29572922 29578620 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01782 9 271 MAP Kinase Kinase Kinase AT3G13530 33.208 3.55e-38 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Viun1g01782 Pkinase 6.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01782 K08857 - gmx:100793379 1056.2