Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01781 ATGCATAAACTTTACTCAGAAATAATCTTATTTTTGGTGGTAAAATCTGTTTTTGACTCTGGTAAGTTTCATAAACCCAATATTGGTTTGACTAAAAATTTAAGAGAAGAATATGTAAATGTGAAACCACGTCCTTGGTATATATATAGTCTGTACTTGACCTTGTTGCAATGTCCCCATTCTCTCTCTACATGTTCTTTTGTTTTGGAGAACGGTGACACCAAGTCCAAAAAGATGGAAGACTATGAAGTGATAGAGCAAATTGGAAGAGGGGCTTTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCCGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGGTTGGCCAAACAGACAGAGAAGTTCAAACGTACTGCACACCAAGAGATGAACCTGATTGCAAAGCTGAATAACCCATACATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACCACATATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCAGATAACATAAAGAAAGCTCGAGGGTCATTTTTTCCTGAGGAGAAAGTCTGCAAATGGCTGACTCAGTTGTTGATAGCCGTTGACTACTTGCACTCTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAACAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGACCTTACTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTTGCTGATATACCTTATGGTTATAAATCAGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGGACATCAACCGGCATTTCGTGCTCCAGACATGGCTGGACTTATCAATAAAATAAACAGATCCTGCATTTCTCCACTGCCTATTGTTTATTCTTCGACACTGAAACAACTTATCAAGAGCATGCTTAGAAAAAATCCAGAGCACAGGCCAACCGCAGCTGAATTGTTAAGGCATCCACTTTTACAACCTTATGTTCTTCGTTGTCATAATGCATCCTCTAATATTCTTCCAGTATATCCCATAGTTAATTCAAAGGATAAAACAAGAAGATCTAATAAATCTAATGGTGGCAAGGACCATAAGGAAAAAGAAGCAAGCTTAGTAAATCGTTTGGAACGGATTCATCCAATTGAGGGAAATGGAGATACACACGTAAGCAATCTTCCTAATGATGCTGTTACAATCTCAACCAGTGCAGAAGACAACATGGAGACCAGGATGGTTGATCTTACCAGCTACATAGTGGAATCTTCTACTAGTATTAGTGACTCAAAAGATGGGTCAACAACATCTGAATCAACTATTTGCAGTGTGTGCAAGGAGGACTTCAAAGGTAGACCTCCAAGGGAAACGACTAACAACGAAATCTCTTTAAAGAGTTCACAAGAATCACTGCATGAGGAACAAATATATGCTGCTAAACATTTTCATAAATTAGAAGATGGCAGCGTTGATGCAGTGACCCCAGAAGTTGAAGACGCTTCTTGCAATGAAGGTTTGAACAATGCTGAAGCACCGAGGGAAGATTCGAGCCATGACATCTCTGGTAAATCAACAATGTCCAGTGAAGGCAGTAGCAGCAGTGATAAAGATAAGTCCATCAATGAGGAAAAGCCATCACTAACTGTGAATCCTATTAGGGTGGAAAATGATACCGAATCTGGAAACCACTTGAATGTATTTACAGAAGGCTCACATATGAACGGCTTGACATCTGATTGTAATGATGCACTTCTAGTTAAGGTTGATGACACAGCTAACAGACACATTCTCTCCACGCATAAAGATGGTAGCACGGTGGAGGTTGACCAGACAAGTGGCGTTGCATTGAGTGTAATAACAGAAGTCGATGGTGATGAGACAAATCTGTTGGATAGTCCCTGCCAACAAAGAGCTGATGCTCTGGAATCTCTGCTAGAATTATGTGCTCAGCTACTTAAGCAAGATAAACTTGAAGAGCTTGCTGGGGTTCTGAGACCATTTGGAAAAGAAGCTGTATCATCAAGAGAAACAGCAATATGGCTGGCAAAAAGCCTCATATCTGCACAAAAATTTAATCCTCAGATCTAG 2115 0.4057 MHKLYSEIILFLVVKSVFDSGKFHKPNIGLTKNLREEYVNVKPRPWYIYSLYLTLLQCPHSLSTCSFVLENGDTKSKKMEDYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIITGYCEGGDMADNIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLTSSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAGHQPAFRAPDMAGLINKINRSCISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNILPVYPIVNSKDKTRRSNKSNGGKDHKEKEASLVNRLERIHPIEGNGDTHVSNLPNDAVTISTSAEDNMETRMVDLTSYIVESSTSISDSKDGSTTSESTICSVCKEDFKGRPPRETTNNEISLKSSQESLHEEQIYAAKHFHKLEDGSVDAVTPEVEDASCNEGLNNAEAPREDSSHDISGKSTMSSEGSSSSDKDKSINEEKPSLTVNPIRVENDTESGNHLNVFTEGSHMNGLTSDCNDALLVKVDDTANRHILSTHKDGSTVEVDQTSGVALSVITEVDGDETNLLDSPCQQRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLAKSLISAQKFNPQI 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01781 704 SUPERFAMILY Protein kinase-like (PK-like) 79 366 IPR011009 -
Viun1g01781 704 ProSitePatterns Protein kinases ATP-binding region signature. 88 111 IPR017441 GO:0005524
Viun1g01781 704 Gene3D Phosphorylase Kinase; domain 1 60 161 - -
Viun1g01781 704 ProSiteProfiles Protein kinase domain profile. 82 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01781 704 SMART serkin_6 82 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01781 704 MobiDBLite consensus disorder prediction 457 478 - -
Viun1g01781 704 MobiDBLite consensus disorder prediction 512 561 - -
Viun1g01781 704 Pfam Protein kinase domain 82 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01781 704 CDD STKc_Nek 81 336 - -
Viun1g01781 704 MobiDBLite consensus disorder prediction 361 380 - -
Viun1g01781 704 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 79 655 - -
Viun1g01781 704 FunFam serine/threonine-protein kinase Nek6 isoform X2 162 350 - -
Viun1g01781 704 FunFam Serine/threonine-protein kinase Nek6 67 161 - -
Viun1g01781 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Viun1g01781 704 Gene3D Transferase(Phosphotransferase) domain 1 164 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01781 Viun-Chr1 29572922 29578620 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01781 75 337 MAP Kinase Kinase Kinase AT3G13530 33.208 1.05e-37 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Viun1g01781 Pkinase 8.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01781 K08857 - gmx:100793379 1050.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01781 1 29572922 29578620 Viun1g01781 1 29572922 29578620 ECH