Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01780 ATGGAAGACTATGAAGTGATAGAGCAAATTGGAAGAGGGGCTTTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCCGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGGTTGGCCAAACAGACAGAGAAGTTCAAACGTACTGCACACCAAGAGATGAACCTGATTGCAAAGCTGAATAACCCATACATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACCACATATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCAGATAACATAAAGAAAGCTCGAGGGTCATTTTTTCCTGAGGAGAAAGTCTGCAAATGGCTGACTCAGTTGTTGATAGCCGTTGACTACTTGCACTCTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAACAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGACCTTACTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTTGCTGATATACCTTATGGTTATAAATCAGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGGACATCAACCGGCATTTCGTGCTCCAGACATGGCTGGACTTATCAATAAAATAAACAGATCCTGCATTTCTCCACTGCCTATTGTTTATTCTTCGACACTGAAACAACTTATCAAGAGCATGCTTAGAAAAAATCCAGAGCACAGGCCAACCGCAGCTGAATTGTTAAGGCATCCACTTTTACAACCTTATGTTCTTCGTTGTCATAATGCATCCTCTAATATTCTTCCAGTATATCCCATAGTTAATTCAAAGGATAAAACAAGAAGATCTAATAAATCTAATGGTGGCAAGGACCATAAGGAAAAAGAAGCAAGCTTAGTAAATCGTTTGGAACGGATTCATCCAATTGAGGGAAATGGAGATACACACGTAAGCAATCTTCCTAATGATGCTGTTACAATCTCAACCAGTGCAGAAGACAACATGGAGACCAGGATGGTTGATCTTACCAGCTACATAGTGGAATCTTCTACTAGTATTAGTGACTCAAAAGATGGGTCAACAACATCTGAATCAACTATTTGCAGTGTGTGCAAGGAGGACTTCAAAGGTAGACCTCCAAGGGAAACGACTAACAACGAAATCTCTTTAAAGAGTTCACAAGAATCACTGCATGAGGAACAAATATATGCTGCTAAACATTTTCATAAATTAGAAGATGGCAGCGTTGATGCAGTGACCCCAGAAGTTGAAGACGCTTCTTGCAATGAAGGTTTGAACAATGCTGAAGCACCGAGGGAAGATTCGAGCCATGACATCTCTGGTAAATCAACAATGTCCAGTGAAGGCAGTAGCAGCAGTGATAAAGATAAGTCCATCAATGAGGAAAAGCCATCACTAACTGTGAATCCTATTAGGGTGGAAAATGATACCGAATCTGGAAACCACTTGAATGTATTTACAGAAGGCTCACATATGAACGGCTTGACATCTGATTGTAATGATGCACTTCTAGTTAAGGTTGATGACACAGCTAACAGACACATTCTCTCCACGCATAAAGATGGTAGCACGGTGGAGGTTGACCAGACAAGTGGCGTTGCATTGAGTGTAATAACAGAAGTCGATGGTGATGAGACAAATCTGTTGGATAGTCCCTGCCAACAAAGAGCTGATGCTCTGGAATCTCTGCTAGAATTATGTGCTCAGCTACTTAAGCAAGATAAACTTGAAGAGCTTGCTGGGGTTCTGAGACCATTTGGAAAAGAAGCTGTATCATCAAGAGAAACAGCAATATGGCTGGCAAAAAGCCTCATATCTGCACAAAAATTTAATCCTCAGATCTAG 1881 0.4147 MEDYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIITGYCEGGDMADNIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLTSSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAGHQPAFRAPDMAGLINKINRSCISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNILPVYPIVNSKDKTRRSNKSNGGKDHKEKEASLVNRLERIHPIEGNGDTHVSNLPNDAVTISTSAEDNMETRMVDLTSYIVESSTSISDSKDGSTTSESTICSVCKEDFKGRPPRETTNNEISLKSSQESLHEEQIYAAKHFHKLEDGSVDAVTPEVEDASCNEGLNNAEAPREDSSHDISGKSTMSSEGSSSSDKDKSINEEKPSLTVNPIRVENDTESGNHLNVFTEGSHMNGLTSDCNDALLVKVDDTANRHILSTHKDGSTVEVDQTSGVALSVITEVDGDETNLLDSPCQQRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLAKSLISAQKFNPQI 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01780 626 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01780 626 Gene3D Transferase(Phosphotransferase) domain 1 86 314 - -
Viun1g01780 626 MobiDBLite consensus disorder prediction 283 302 - -
Viun1g01780 626 FunFam serine/threonine-protein kinase Nek6 isoform X2 84 272 - -
Viun1g01780 626 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01780 626 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Viun1g01780 626 MobiDBLite consensus disorder prediction 434 483 - -
Viun1g01780 626 SUPERFAMILY Protein kinase-like (PK-like) 1 288 IPR011009 -
Viun1g01780 626 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Viun1g01780 626 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 577 - -
Viun1g01780 626 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01780 626 FunFam Serine/threonine-protein kinase Nek6 1 83 - -
Viun1g01780 626 MobiDBLite consensus disorder prediction 379 400 - -
Viun1g01780 626 CDD STKc_Nek 3 258 - -
Viun1g01780 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01780 Viun-Chr1 29572922 29578778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01780 4 259 MAP Kinase Kinase Kinase AT3G13530 33.074 1.12e-37 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Viun1g01780 Pkinase 6.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01780 K08857 - gmx:100793379 1033.48