Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01779 ATGGCTGACCCCTACTCCAATTTTTTCTCTTCCTCACCCTTCTTCCGTTTCAATCACCATTTCCCATCTTCAAACCCTTCTCCGCACGCTCCCTATGTCCACCACAACTTCATCAACCACTCCAAAACCAGCGACACCACTTTTCTCCACTACCACCACCACCACCACCACCACAACCCTGCAACTTTTTCTTCTTTTCCACCTTCCCCTCCCTTGAGAGAAGAACTACCCCTCTTGAGACTCAGTCCGGCGAAGCAAGAGGAGGAGGAGGAGGAGGACCTGTCTTGCACTGGAGCCATGGATGTGGAGGAGAGGATGCACATCCACCCCAAAGAGGAAGAAGATGATGAAGATGCCACCGTCACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCCGTCCTCTCTTCTTCCTCGGAGACCACTGACAAAGATCATGGAGATGCTGCTGCTGAGGATTCTTCTGCCGGCTTCAGACTCAACAAGGGCCAGTACTGGATCCCTACTCCTTCTCAGATTCTCATTGGCCCTACCCAGTTCTCTTGCCCTGTTTGCTGCAAAACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGACCTGAATCTCTGAGGGGTACCCAACCAACGGGCATGCTGAGGCTTCCTTGCTATTGTTGTGCTCCAGGGTGCAGAAACAACATTGATCACCCGAGATCAAAGCCTCTGAAAGACTTTAGAACACTTCAAACGCATTACAAAAGGAAGCATGGGATCAAACCTTTCATGTGCAGGAAATGCGGGAAGGCTTTTGCGGTGAGGGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGCTCTGGTACTGCATCTGCGGCTCCGATTTCAAGCACAAGAGATCTCTTAAAGACCATATTAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGCATCGATGGTTTCGAAGAAGAAGATGAGCCAGCTTCTGAAGTAGAGCAAGATAATGATGATTCCACCCAGTGA 1047 0.4986 MADPYSNFFSSSPFFRFNHHFPSSNPSPHAPYVHHNFINHSKTSDTTFLHYHHHHHHHNPATFSSFPPSPPLREELPLLRLSPAKQEEEEEEDLSCTGAMDVEERMHIHPKEEEDDEDATVTVALHIGLPSPSAAEMASVLSSSSETTDKDHGDAAAEDSSAGFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDDSTQ 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01779 348 Gene3D Classic Zinc Finger 185 208 - -
Viun1g01779 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 290 IPR013087 -
Viun1g01779 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 186 213 IPR013087 -
Viun1g01779 348 SMART c2h2final6 270 290 IPR013087 -
Viun1g01779 348 SMART c2h2final6 186 208 IPR013087 -
Viun1g01779 348 PANTHER ZINC FINGER PROTEIN WIP2 43 344 IPR043584 GO:0003700|GO:0010468
Viun1g01779 348 FunFam Zinc finger protein WIP2 239 321 - -
Viun1g01779 348 MobiDBLite consensus disorder prediction 134 161 - -
Viun1g01779 348 SUPERFAMILY beta-beta-alpha zinc fingers 251 290 IPR036236 -
Viun1g01779 348 ProSitePatterns Zinc finger C2H2 type domain signature. 188 208 IPR013087 -
Viun1g01779 348 Gene3D Classic Zinc Finger 248 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01779 Viun-Chr1 29537464 29540168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01779 1 345 C2H2 Transcription Factor Family AT3G57670 62.435 2.14e-146 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g01779 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01779 - - gmx:100802907 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01779 1 29537464 29540168 Viun1g01779 1 29537464 29540168 ECH
Viun1g01779 1 29537464 29540168 Viun5g03620 5 45570356 45572673 ECH
Viun1g01779 1 29537464 29540168 Viun7g01081 7 11404010 11405305 PCT