Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01774 ATGGCAACTGCGGGGAGTAAGAAGGCTCTATCATTGCAGCAATTCATCTCTGTTACCGCTCCTCTTCTTGATTTGGAAAAGGAAGCTGAGATTTCAAGCTCAATTGCTACCGGCGCGTCCAGGAATTTGGACACCGCTCAAAAGAGGGGCTCCACAATCCTCAACTTGAAGTGCATCGATGTCCAGACTGGGCTTATGGGGAAGTCTCTGATCGAGTTCCAGTCTACAAAAGGAGATGTTCTTCCCGCACATAAGTTTGGTACTCATGATGTTGTTGTTTTAAAACTCAACAAGGCTGATTTAGGTTCTCCTGCTCTTGGACAAGGTGTTGTTTACAGATTAAAGGACTCGTCAATAACTGTTGCTTTTGATGATATACCGGAAGACGGTTTGAACAGTCCCCTAAGGCTGGAAAAAGTAGCAAATGAGGTGACATATCGCAGGATGAAAGACGCATTGATACAGTTGAGTAAAGGAGTGCACAAGGGTCCTGCCTCTGATCTGATTCCTGTCTTGTTTGGGGAGAGGCAACCTACAGTTTCCAAGAAAGATATATCCTTTACTCCCTATAATAGAAATCTTGATCAGTCTCAGAAAGAAGCAGTTTTAAAAGCTCTATCGTCAAAGAATGTGTTCTTGCTGCATGGACCACCTGGAACGGGAAAAACTACAACAGTTGTAGAAATTATATTACAAGAAGTAAAACGTGGATCTAAGATTCTTGCTTGTGCAGCCTCCAATATTGCTGTTGACAACATTGTAGAGCGGCTAGTTCCACATAGAGTTAAGCTGGTGAGACTGGGTCATCCTGCACGCTTATTGCCTCAAGTACTGGACAGTGCGCTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGACATTCGGAAAGAAATGAAGGCATTGAATGGAAAACTTCTGAAAACCAAAGACAGAAATACAAGAAAGGACATACAAAGGGAACTTAGGACTCTATCCAAAGAAGAACGTAAAAGGCAGCAGCTTGCTGTAACAGATGTACTTAAAAGTGCAGATGTAATATTAACTACTTTGATTGGGGCTTTCTCTAAGAAACTAGACAGCACTTCATTTGATTTAGTGATTATTGACGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTCTGCTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGCTTAGGAAGAACTCTCTTTGAACGACTTGCAGAAACGTATGGAGATGAAATCACATCAATGCTTACTGTGCAGTACCGTATGCATGAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGATCAAGGCTCATCCAAGTGTTAGTGCACATATGTTATTTGATCTTGACGGTGTGAAGCGGACATCTTCAACTGAACCAACCCTTCTTCTAGTAGACACAGCTGGATGTGATATGGAAGAAAAGAAAGATGAAGAAGATAGCACCTTTAATGAAGGTGAAGCTGAAGTTACTGTGGCTCATGCGAAGAGACTAGTGCAAAGTGGGGTGCTTCCTTCTGATATAGGAATTATTACCCCATATGCTGCCCAGGTTGTTTTGCTCAAGATGTTGAAAAATAAGGAGGACAAGTTGAAGGATGTTGAAATCTCAACAGTTGATGGTTTCCAAGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAAAAAGAGGTTGGCTTTCTAAGTGATCGCCGACGAATGAATGTCGCTGTGACACGGTCTAGAAGGCAATGCTGTCTTGTCTGTGACACAGAGACAGTCAGTGGTGATGGATTTCTAAAGCGATTGATTGAGTATTTTGAGGAGCATGGTGAATATTTGAGTGCATCTGAGTACCAGAATGAGTAG 1935 0.4217 MATAGSKKALSLQQFISVTAPLLDLEKEAEISSSIATGASRNLDTAQKRGSTILNLKCIDVQTGLMGKSLIEFQSTKGDVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHKGPASDLIPVLFGERQPTVSKKDISFTPYNRNLDQSQKEAVLKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDRNTRKDIQRELRTLSKEERKRQQLAVTDVLKSADVILTTLIGAFSKKLDSTSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAETYGDEITSMLTVQYRMHELIMDWSSKELYNSKIKAHPSVSAHMLFDLDGVKRTSSTEPTLLLVDTAGCDMEEKKDEEDSTFNEGEAEVTVAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKEDKLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRSRRQCCLVCDTETVSGDGFLKRLIEYFEEHGEYLSASEYQNE 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01774 644 CDD DEXXQc_SMUBP2 193 441 - -
Viun1g01774 644 Pfam AAA domain 417 613 IPR041679 -
Viun1g01774 644 FunFam P-loop containing nucleoside triphosphate hydrolase 440 644 - -
Viun1g01774 644 Pfam AAA domain 194 408 IPR041677 GO:0004386
Viun1g01774 644 Coils Coil 295 315 - -
Viun1g01774 644 CDD SF1_C_Upf1 442 630 IPR047187 -
Viun1g01774 644 FunFam DNA-binding protein SMUBP-2 38 140 - -
Viun1g01774 644 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 31 643 - -
Viun1g01774 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 630 IPR027417 -
Viun1g01774 644 SMART ultradead3 190 441 IPR014001 -
Viun1g01774 644 Gene3D - 440 644 IPR027417 -
Viun1g01774 644 SMART AAA_5 208 460 IPR003593 GO:0016887
Viun1g01774 644 NCBIfam IGHMBP2 family helicase 342 637 IPR004483 GO:0003677|GO:0005524
Viun1g01774 644 Gene3D - 20 424 IPR027417 -
Viun1g01774 644 Gene3D - 38 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01774 Viun-Chr1 29476935 29483973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01774 167 377 Core DNA Replication Machinery Family AT1G08840 27.014 2.39e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01774 - K19036 gmx:100810545 1188.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01774 1 29476935 29483973 Viun1g01774 1 29476935 29483973 ECH