Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01773 ATGGATACTTGCAAGAAGTCCCCCCTGAAGCCATGGAAGAAAGGGCCAACCAGAGGGAAAGGTGGTCCACAAAATGCCTCGTGCGAGTACCGAGGTGTTCGACAGAGAACATGGGGCAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAAGCAGACTCTGGCTTGGTTCTTTTTCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAAGCTGCAAGGAGACTCTATGGACCAGATGCATACCTTAATCTTCCACACCTGCAGCCAAGGCCTACTTCATCTATTACACCAGGAAAGTTCAAATGGTTCCCTTCCAAGAACTTCATTTCTATGTTCCCTTCCTGTGGATTACTCAATGTTAGTGCTCAACCCAGTGTTCATTTAATCCATCAGAGGCTACAAGAGCTTAAGCACCAAAATTCAGCTGAGAGGCATTCCCCAAATAGTTCATGCAATGATCCAGAGGCAGAAACTCAGAATGTAGACAACACTGACAATGCAGAAAGCACTCCAAAAGACTCTCAAACATCATCCGAGGATGTTCCGGGAGATCTTCAAGAGAAACCCCAGATAGACTTACATGAGTTTCTTCAACAGCTGGGAATACTTAAAGAAGAAACACAGTCAGCAAGAGCTGATAGCACAGAAAGTTCAACAACAGTTCCTGAAGCTGTGTTGAGATATGAAAACGATGAATTGGGAGTGTTTTCTGACACGAGTGTTAACTGGGAAGCGTTGATTGAGATGCATGGAATTGCAGGTCTTCAGGAATTAGAATCCACCCAGCTTGAAGCATATGGCACAAATGATGACTTTACTTTCTCAACTTCCATTTGGAACTTCTAA 849 0.4441 MDTCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRSRLWLGSFSTAEEAAMAYDEAARRLYGPDAYLNLPHLQPRPTSSITPGKFKWFPSKNFISMFPSCGLLNVSAQPSVHLIHQRLQELKHQNSAERHSPNSSCNDPEAETQNVDNTDNAESTPKDSQTSSEDVPGDLQEKPQIDLHEFLQQLGILKEETQSARADSTESSTTVPEAVLRYENDELGVFSDTSVNWEALIEMHGIAGLQELESTQLEAYGTNDDFTFSTSIWNF 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01773 282 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Viun1g01773 282 MobiDBLite consensus disorder prediction 137 186 - -
Viun1g01773 282 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Viun1g01773 282 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Viun1g01773 282 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Viun1g01773 282 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Viun1g01773 282 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 220 - -
Viun1g01773 282 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Viun1g01773 282 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Viun1g01773 282 MobiDBLite consensus disorder prediction 1 28 - -
Viun1g01773 282 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Viun1g01773 282 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Viun1g01773 282 MobiDBLite consensus disorder prediction 144 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01773 Viun-Chr1 29471952 29473170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01773 5 282 AP2-EREBP Transcription Factor Family AT3G57600 52.669 2.11e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun1g01773 AP2 4.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01773 - - var:108328773 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01773 1 29471952 29473170 Viun1g01773 1 29471952 29473170 ECH