Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01759 ATGGGGACTCCGGAATTTCCAAATCTCGGCAAGCATTGTTCTGTTTCCGATTGCAGGCAACTTGATTTCTTGCCCTTCACATGCGATCGCTGTAATCAGATATTTTGTTTGGAGCACCGAGGTTATATTGAGCACAAGTGCACAAAGCCCAACAAAGACGATGTCAAAGTTGTCATATGTCCCCTCTGCGCAAAAGGAGTTCGCCTCATTCCAGATCAAGATCCCAACATAGCTTGGGACCATCATGTTAACATTGATTGTGATCCATCAAATTACCAGAAAGTGACAAAGAAGAGAAAATGCCCTGCCCCTGGATGCAGAGAGGTATTGGTTTTCTCCAACACAATCAAGTGCAGGGATTGCTTGGAAGACCATTGTTTGAAGCACCGCTTTGGCTCTGATCACAAATGTTCTGGTCCCAAAAAGTTAGAGACAAGTTATTCATTCATGGGTTTATTTACTACGACTAAAAGAGAGGAGCCAAAACCCAATTTAACTTCCACAGCATCATCTAAATGGACTTCAAGCTTTCTCAGTGTGGCTTCTAACATTCGTGCCTCGGCTGAAGCGAGCATGTCAAAATTGAGCAATGAAATTAACCAAGTTTGGCTGGCAGCAAGGGATGGTGCGGGACCGAACAGTGGCAGTGGAAATAAAAATGATCTTCAAGAGGAAACTTGCCCTCAATGTGGTGTAAAGTTTTCCTCTGCGATTTCTTTGGTGGATCATGTGCAAAAAGTTCATGAAAGCAATGGGAAACCATTAGGGGTTAAGAAGATTGATGCGTGCCCCAAGTGTAGTAGAGGGTTTGTTGACCCGGTATCCCTAGTGGAACATATTGAGAAGGATCATGGTGGTTCTGCAGCATAG 870 0.4402 MGTPEFPNLGKHCSVSDCRQLDFLPFTCDRCNQIFCLEHRGYIEHKCTKPNKDDVKVVICPLCAKGVRLIPDQDPNIAWDHHVNIDCDPSNYQKVTKKRKCPAPGCREVLVFSNTIKCRDCLEDHCLKHRFGSDHKCSGPKKLETSYSFMGLFTTTKREEPKPNLTSTASSKWTSSFLSVASNIRASAEASMSKLSNEINQVWLAARDGAGPNSGSGNKNDLQEETCPQCGVKFSSAISLVDHVQKVHESNGKPLGVKKIDACPKCSRGFVDPVSLVEHIEKDHGGSAA 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01759 289 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Viun1g01759 289 ProSitePatterns Zinc finger C2H2 type domain signature. 263 284 IPR013087 -
Viun1g01759 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 261 289 IPR013087 -
Viun1g01759 289 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Viun1g01759 289 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Viun1g01759 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 253 IPR013087 -
Viun1g01759 289 SUPERFAMILY beta-beta-alpha zinc fingers 226 280 IPR036236 -
Viun1g01759 289 Pfam zinc-finger C2H2-type 227 248 IPR041697 -
Viun1g01759 289 SMART c2h2final6 261 284 IPR013087 -
Viun1g01759 289 SMART c2h2final6 225 248 IPR013087 -
Viun1g01759 289 ProSitePatterns Zinc finger C2H2 type domain signature. 227 248 IPR013087 -
Viun1g01759 289 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Viun1g01759 289 Gene3D Classic Zinc Finger 189 287 - -
Viun1g01759 289 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 251 - -
Viun1g01759 289 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Viun1g01759 289 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Viun1g01759 289 SUPERFAMILY AN1-like Zinc finger 93 144 IPR035896 -
Viun1g01759 289 Pfam Zinc finger, C2H2 type 263 284 IPR013087 -
Viun1g01759 289 Gene3D - 2 65 IPR035896 -
Viun1g01759 289 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Viun1g01759 289 Gene3D - 82 148 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01759 Viun-Chr1 29349822 29351999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01759 1 288 C2H2 Transcription Factor Family AT2G41835 57.388 3.56e-110 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g01759 zf-AN1 9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01759 - - gmx:100806459 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01759 1 29349822 29351999 Viun1g01759 1 29349822 29351999 ECH
Viun1g01759 1 29349822 29351999 Viun7g00423 7 3083211 3087760 PCT