Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01753 ATGGAAGCTCTGTGCTTGTTACACATTCTGCTAGCTTGGTGTCTGTCATGTTTTGAGCTTGTTGGTGCTGAGCTTCAGGAGCAAGCTATATTACAGGCCATCAACCAAGAGCTTAGAGTCCCTGGATGGGGGGATGCCAACAACTCAGATTACTGCACTTGGCAAGGTGTCAACTGTGGTAACCACTCAATGGTGGAGAGCTTGGATCTGTCTCACCGGAATCTTCGAGGTAATGTAACTTTAATGTCTGAGCTCAAAGCATTGAAGCGGCTTGATCTTTCAAATAATAACTTTGATGGATTGATTCCTCCTGATTTTGGAAATTTATCTGATCTCGAAGTTTTGGATTTGTCTTCAAATAAGTTCCAAGGTTCAATCCCACCTCAGTTGGGTGGTCTCAGAAACCTCAAATCATTGAACCTTTCCAATAATGTGCTTGTGGGAGAAATACCAATGGAACTTCAGGGCTTAGAGAAATTGCAAGATTTTCAAATTTCTAGTAACCATTTGAGTGGTCTTATACCTTCCTGGGTGGGAAACTTAACTAATCTGAGGCTTTTCACTGCTTATGAGAACCGTTTAGATGGCAAGATTCCAGATGATCTAGGCTCAATTTCTGAGCTTCAAATACTTAACTTGCACTCTAACCAGCTTGAAGGTCCAATACCAGCTAGCATTTTTGTTCCAGGGAAGCTGGAAGTTCTGGTTCTCACCCAGAATAATTTTAGTGGAGAACTTCCTGAGGAAATTGGGAATTGCAAAGCCCTTTCCAGCGTTCGAATTGGAAACAACCATCTAGTAGGTACCATTCCTAAGACCATTGGAAATCTTAGTAGCCTAACCTACTTTGAAGCTGATAATAATGATCTTTCTGGTGAGGTTGTGGCAGAATTTTCTCAGTGTTCTAATCTTACTCTCTTGAATTTGGCTTCAAATGGATTTACTGGAACAATTCCACAAGACTTTGGACAACTTATGAATCTTCAGGAATTAATTCTTTCTGGAAATAGCCTATTTGGCGATATTCCAATATCAATTCTGAGTTGCAAAAATCTTAACAAGCTTGATATTAGCAACAACAGATTCAATGGGACAATACCAAATGAAATCTGCAATATCACCCGGTTGCAGTACTTGCTGTTGGATCAGAATTTTATAAGAGGAGAGATCCCCCATGAAATTGGTAATTGTGCAAAACTTCTTGAATTACAATTGGGCAGCAATATCTTGACTGGAACTATTCCTCCTGAGATTGGGCGCATTAGGAACTTACAGATAGCTTTAAATTTGAGCTTCAATCATCTTCATGGACTTCTGCCCCCTGAATTGGGAAAACTGGACAAACTTGTTTCACTGGATGTTTCAAACAATCGGCTATCAGGTAATATCCCACCTGAACTTAAGGGAATGTTGAGCTTGATAGAGGTGAACTTCTCAAATAATCTGTTAGCAGGCCTGGTACCAACATTTGTACCATTCCAGAAGAGTCCTAGTTCAAGTTTTTTGGGCAACAAAGGGCTTTGTGGAGAGCCTATAAACCCTTCATGTGGAACCCTTTATGATGATCACAAGGCTTACCATCACCGGGTTTCTTACAGAATCATACTAGCTGTAATTGGTTCTGGTTTGGCTGTTTTTATGTCGGTAACTATAGTTGTCTTGCTGTTTATGATCAGAGAGAGGCAAGAAAAAGTAGCCAAAGATGCTGGGATAGTCGATGAGAGCATCAATGACAACCCAACTATAATTGCAGGGACTGTTTTTGTTGATAATCTCAAACAAGCAGTAGACCTTGATGCTGTTGTTAAAGCAACTCTGAAAGACTCTAATAAGCTCAGCAGCGGAACTTTCAGCACAGTTTACAAGGCAATCATGCCTTCTGGGGTGGTCTTATCTGTTAGGAGATTGAAGTCTGTAGACAAGACAATAATCCACCACCAGAACAAGATGATTAGAGAACTTGAAAGACTGAGCAAAGTTTGTCATGATAATCTTGTGCGTCCCATTGGCTATGTCATTTATGAAGATGTTGCTCTTCTCTTGCATCATTATTTTCCAAACGGAACACTGGCTCAGCTTCTTCATGAATCTACCCGGAAACCTGAATATCAACCTGACTGGCCCTCTAGATTGTCCATTGCCATTGGTGTGGCAGAAGGTTTGGCTTTCCTTCATCATGTGGCAATCATCCATCTTGACATTTCTTCTGGCAATGTTCTCTTGGATGCAAATTTCAAACCATTAGTTGGGGAGATAGAGATTTCAAAACTTCTGGATCCAACCAAAGGCACTGCAAGTATCAGTGCAGTTGCTGGTTCCTTTGGTTACATACCTCCAGAATATGCATATACTATGCAAGTGACAGCACCAGGAAATGTTTATAGCTACGGTGTTGTTCTGTTGGAGATCCTCACAACTAGATTACCAGTTGATGAGGATTTTGGTGAAGGTGTAGATTTGGTGAAATGGGTTCACAGTGCTCCAGTGAGAGGGGAAACTCCAGAGCAGATATTGGATGCCAGGCTTAGCACAGTTTCTTTTGGTTGGAGGAAAGAAATGCTTGCTGCTTTGAAGGTTGCATTGCTGTGCACCGACAACACACCAGCCAAACGACCGAAAATGAAGAATGTAGTGGAAATGCTGCGAGAGATAAAGCAAAACTGA 2664 0.4122 MEALCLLHILLAWCLSCFELVGAELQEQAILQAINQELRVPGWGDANNSDYCTWQGVNCGNHSMVESLDLSHRNLRGNVTLMSELKALKRLDLSNNNFDGLIPPDFGNLSDLEVLDLSSNKFQGSIPPQLGGLRNLKSLNLSNNVLVGEIPMELQGLEKLQDFQISSNHLSGLIPSWVGNLTNLRLFTAYENRLDGKIPDDLGSISELQILNLHSNQLEGPIPASIFVPGKLEVLVLTQNNFSGELPEEIGNCKALSSVRIGNNHLVGTIPKTIGNLSSLTYFEADNNDLSGEVVAEFSQCSNLTLLNLASNGFTGTIPQDFGQLMNLQELILSGNSLFGDIPISILSCKNLNKLDISNNRFNGTIPNEICNITRLQYLLLDQNFIRGEIPHEIGNCAKLLELQLGSNILTGTIPPEIGRIRNLQIALNLSFNHLHGLLPPELGKLDKLVSLDVSNNRLSGNIPPELKGMLSLIEVNFSNNLLAGLVPTFVPFQKSPSSSFLGNKGLCGEPINPSCGTLYDDHKAYHHRVSYRIILAVIGSGLAVFMSVTIVVLLFMIRERQEKVAKDAGIVDESINDNPTIIAGTVFVDNLKQAVDLDAVVKATLKDSNKLSSGTFSTVYKAIMPSGVVLSVRRLKSVDKTIIHHQNKMIRELERLSKVCHDNLVRPIGYVIYEDVALLLHHYFPNGTLAQLLHESTRKPEYQPDWPSRLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANFKPLVGEIEISKLLDPTKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVDEDFGEGVDLVKWVHSAPVRGETPEQILDARLSTVSFGWRKEMLAALKVALLCTDNTPAKRPKMKNVVEMLREIKQN 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01753 887 ProSitePatterns Tyrosine protein kinases specific active-site signature. 729 741 IPR008266 GO:0004672|GO:0006468
Viun1g01753 887 CDD STKc_IRAK 612 884 - -
Viun1g01753 887 Pfam Leucine rich repeat 87 146 IPR001611 GO:0005515
Viun1g01753 887 SMART LRR_typ_2 446 469 IPR003591 -
Viun1g01753 887 SMART LRR_typ_2 157 180 IPR003591 -
Viun1g01753 887 SMART LRR_typ_2 373 397 IPR003591 -
Viun1g01753 887 SMART LRR_typ_2 109 133 IPR003591 -
Viun1g01753 887 SMART LRR_typ_2 85 108 IPR003591 -
Viun1g01753 887 SMART LRR_typ_2 205 229 IPR003591 -
Viun1g01753 887 SMART LRR_typ_2 325 349 IPR003591 -
Viun1g01753 887 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 225 519 - -
Viun1g01753 887 Gene3D Transferase(Phosphotransferase) domain 1 685 887 - -
Viun1g01753 887 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 279 886 - -
Viun1g01753 887 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 685 887 - -
Viun1g01753 887 Pfam Protein tyrosine and serine/threonine kinase 609 881 IPR001245 GO:0004672|GO:0006468
Viun1g01753 887 Gene3D Ribonuclease Inhibitor 60 227 IPR032675 -
Viun1g01753 887 Gene3D Ribonuclease Inhibitor 228 518 IPR032675 -
Viun1g01753 887 SUPERFAMILY L domain-like 198 511 - -
Viun1g01753 887 SUPERFAMILY Protein kinase-like (PK-like) 606 884 IPR011009 -
Viun1g01753 887 SUPERFAMILY L domain-like 45 292 - -
Viun1g01753 887 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 576 684 - -
Viun1g01753 887 Gene3D Phosphorylase Kinase; domain 1 575 684 - -
Viun1g01753 887 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 25 174 - -
Viun1g01753 887 ProSiteProfiles Protein kinase domain profile. 606 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01753 887 PRINTS Leucine-rich repeat signature 88 101 - -
Viun1g01753 887 PRINTS Leucine-rich repeat signature 109 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01753 Viun-Chr1 29321663 29325875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01753 1 886 Receptor kinase-like Gene Family AT2G41820 73.341 0.0 1309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun1g01753 PK_Tyr_Ser-Thr 1.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01753 - - gmx:100789684 1648.25