Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01722 ATGGCTTCGTCTTCCTCCGATCCCGGAAAGTCCGCGGAGACGTCGGAACCGGCGGTGGCAACTGATCAGCTCTTGCTCTACCGAGGATTGAAGAAAGCGAAGAAGGAAAGAGGTTGCACTGCCAAAGAGCGCATCAGCAAAATGCCTCCCTGCGCCGCTGGAAAACGGAGCTCAATATACCGCGGCGTCACCAGGCATAGGTGGACTGGTCGTTATGAAGCGCATCTTTGGGATAAGAGTACGTGGAATCAGAATCAGAATAAGAAGGGAAAACAAGTTTACTTGGGGGCATATGATGACGAGGAAGCAGCTGCTAGAGCTTATGATCTTGCTGCTCTCAAATACTGGGGTCCAGGGACTCTCATTAACTTTCCAGTGACTGATTATACAAGAGATCTTGAAGAAATGCAGAATGTGTCGAGAGAAGAGTACCTTGCATCTTTACGGCGGAAGAGCAGTGGTTTTTCTAGAGGACTATCAAAATATCGTGGACTCTCCAGTCGATGGGAGTCGTCATATGGCCGCATGTCTGGATCTGATTACTTCAATAGCATGCATTATGGGGATGATTCAGCAGCAGAAAGTGAATATGTAAGTGGTTTCTGCATAGAAAGAAAGATTGATTTAACAAGTCACATCAAATGGTGGGGATCTAATAAGACTCGACATTCTGACTCTGGGACAAGATTATCGGAAGAAAAAAAGCTTGGTTCTGCTGGAGATATTTGCAGTGAACTAAAGCAATTGGAACAGAAAGTTCAACCTACAGAACCTTATCAGATGCCACAGTTAGGCAGGCTACACAATGAGAAAAAGCAAAGAAGTTCTTCAGTCTCTGCCTTAAGGATCCTTTCGCAATCTGCTGCTTACAAGAGCTTGCAAGAGAAAGCTTCAAAGAAACAGGAAAATAGTATTGATAACGATGAGAATGAAAACAAAAATACAATCAACAAATTGGATCATGGAAAGGCAGTTGAGAAACCATCAAATCATGATGGAGGCAGTGATCGGCTTGACATTGCAATGGGAATGAGTGGGACAATGCCTCTTCAAAGAAATGTCTACCCGTTGACGCCATTCTTGTCAGCACCACTTTTGACAGCTTACAATACTGTTGATCCAATGGCAGATCCTGCTCTCTGGACATCTCTTGTTCCCGTACTTCCTGCTGGCCTTTCTCGTACAGATGAGGTTACCAAGACAGAAACCAGTTCAACGTACACAATGTTTCAGCCAGAGGAATGA 1245 0.4474 MASSSSDPGKSAETSEPAVATDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSRWESSYGRMSGSDYFNSMHYGDDSAAESEYVSGFCIERKIDLTSHIKWWGSNKTRHSDSGTRLSEEKKLGSAGDICSELKQLEQKVQPTEPYQMPQLGRLHNEKKQRSSSVSALRILSQSAAYKSLQEKASKKQENSIDNDENENKNTINKLDHGKAVEKPSNHDGGSDRLDIAMGMSGTMPLQRNVYPLTPFLSAPLLTAYNTVDPMADPALWTSLVPVLPAGLSRTDEVTKTETSSTYTMFQPEE 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01722 414 ProSiteProfiles AP2/ERF domain profile. 59 125 IPR001471 GO:0003700|GO:0006355
Viun1g01722 414 FunFam AP2-like ethylene-responsive transcription factor 58 127 - -
Viun1g01722 414 Coils Coil 298 318 - -
Viun1g01722 414 MobiDBLite consensus disorder prediction 295 334 - -
Viun1g01722 414 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 298 - -
Viun1g01722 414 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Viun1g01722 414 PRINTS Ethylene responsive element binding protein signature 107 127 IPR001471 GO:0003700|GO:0006355
Viun1g01722 414 SMART rav1_2 59 131 IPR001471 GO:0003700|GO:0006355
Viun1g01722 414 Gene3D AP2/ERF domain 59 127 IPR036955 GO:0003700|GO:0006355
Viun1g01722 414 Pfam AP2 domain 59 117 IPR001471 GO:0003700|GO:0006355
Viun1g01722 414 MobiDBLite consensus disorder prediction 292 336 - -
Viun1g01722 414 MobiDBLite consensus disorder prediction 253 278 - -
Viun1g01722 414 SUPERFAMILY DNA-binding domain 58 126 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01722 Viun-Chr1 29055141 29058920 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01722 18 412 AP2-EREBP Transcription Factor Family AT2G41710 63.814 2.52e-166 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun1g01722 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01722 K09285 - gmx:100814117 770.77