Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01718 ATGGAAATAAAAGATAATAAAGGATTGTTGTTGGGAGGAGGAAGAAAGTGCACTCCGCCGCCGTTTTTGCTGAAGACCTACATGCTTGTGGAGGATCCGGCTACCGACAACGTCGTCTCGTGGAATGCCGACGGGACGGCATTTGTGGTGTGGCAGCCGGCGGAGTTTGCACGTGATCTCCTCCCAACACTCTTCAAGCACAGCAACTTCTCCAGCTTTGTGCGCCAGCTAAATACTTATGGTTTTCGTAAGGTTGCAACAAGTAGATGGGAGTTTCTGAATGAGAAGTTCAAGAAAGGTGAAAGAGAAGAGCTATGTGAGATTCGGAGAAGAAAAGCTTGGAGCAACAACAAGCAACAAGGAAATGTAGGAAACCAAGTGACAGGTCAAGATTCTGATGAAGATCAAAGGTCGTCATCAACTTCATCGTATTGTGGGTACAGTAATCTGGTGGATGAAAACAAGAGGCTTAAGAAGGAGAATGGGGTGCTGAACTGTGAGCTGAGGAGCATGAAAAGAAAGTGCAAGGAGCTTCTTGATTTGGTGGCCAAATATTCATCAGATGATGCAGACGAGAAGGAAGAAGATGAAAGGCCAATGCTGTTTGGAGTGAGGTTAGAGGTTGAAGGAGGGATGGAGATGAAGAGGAATAGAACTGAGATCACTGAAAGCGCAAGCATTATGCTGTCTCAGTCATGCAAATAG 705 0.4582 MEIKDNKGLLLGGGRKCTPPPFLLKTYMLVEDPATDNVVSWNADGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFLNEKFKKGEREELCEIRRRKAWSNNKQQGNVGNQVTGQDSDEDQRSSSTSSYCGYSNLVDENKRLKKENGVLNCELRSMKRKCKELLDLVAKYSSDDADEKEEDERPMLFGVRLEVEGGMEMKRNRTEITESASIMLSQSCK 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01718 234 SUPERFAMILY "Winged helix" DNA-binding domain 18 111 IPR036390 -
Viun1g01718 234 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g01718 234 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g01718 234 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g01718 234 Pfam HSF-type DNA-binding 22 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g01718 234 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 181 IPR027725 -
Viun1g01718 234 SMART hsfneu3 18 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g01718 234 MobiDBLite consensus disorder prediction 117 143 - -
Viun1g01718 234 Coils Coil 147 174 - -
Viun1g01718 234 ProSitePatterns HSF-type DNA-binding domain signature. 61 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g01718 234 Gene3D - 14 112 IPR036388 -
Viun1g01718 234 FunFam Heat stress transcription factor B-4 14 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01718 Viun-Chr1 28967391 28969486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01718 19 207 HSF AT2G41690 58.937 1.63e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun1g01718 HSF_DNA-bind 2.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01718 K09419 - gmx:100786140 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01718 1 28967391 28969486 Viun1g01718 1 28967391 28969486 ECH