Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01716 ATGGAGTTGCAGAGTAATGCAGATACTGCAGTGGAGAATAAGAGAAGGGTGTGTTTGTTTTGGGAAGATTTAACAGTGGTAGCATCAAATGGAAGCAATAGTGCAGAAAAGGAACTCCTAAAAGGGTTAAGTGGTTATGCAGAACCCAACCGGATTATGGCACTCATCGGTCCTTCAGGATCTGGGAAATCCACTTTGCTTGCTGCACTCGCTGGTATACTTCCAAGCAATGTTAGGATGAGCGGAAATGTGGTACTGAATGGGAGTACGAGAAGGATGACAGGCTGCAAAGATGTTTGTTACGTTACACAAGAAGATTATTTCTTGGGAACTCTAACTGTGAAGGAAACCCTCACATATGCAGCACGTTTGAGACTTCCTTCTGATACAACCAGAAACGAGATTGAGAAGGTGGTGACCAATGTATTGGCTGAAATGGGTCTGGAAGATAGTGCAGAAACCAGACTTGGAAATTGGCATCTGAGAGGCATAAGTACCGGAGAGAAAAGAAGGCTCAGCATAGGCATTGAAATCTTAACTCAACCTCATGTAATGTTTCTTGATGAACCCACCAGTGGCTTGGATAGTGCAGCCTCTTTCTATGTCATTTCTTCTCTATCAAACATAGCTCATGATGGAAGAATAGTCATATGCTCCATTCACCAGCCCAGTGGTGAAATCTTCAACCTTTTCGATGATCTGGTTCTCCTTGCAGCAGGTGAAGCTGTGTACTTTGGACAAGCAAATATGGCTGTAAAGTTCTTTGCTGATGCAGGGTTTCCTTGTCCAATCCGAAGGAATCCTCCTGAGCATTTCCTTCGTTGTGTTAGCCCAGAGTTCGATAGTGTCACCGCCTTAATAAAGTCTAAAATTGAAAACGCCGCTTCATCGTCGTTGAATTCTCTTATGAATATGACGACAGAGGAGATTAAATCAGAACTCGTAATGAACTACAAGAACTCCATACATTCAGCAAATGCAAGGAGAAAAATCAGAGAAATGAAAAAAAATGAAGAACCTTTAGTTGAGAAGATATACGATACCAGTTGGCAGAAGCAGCTATGGACACTGACAAATAGATCCTTCTTAAATATGACCAGAGACTTTGGTTACTATTGGTTAAGGATTGTATTCTATATCATCATATCAGTGAGTGCTGGTTGTCTTCTTTTCAACATAGGAACAAGTAATGAAGCAATCATATCCAGAGGCAAATGTGATGGATTCATCTTTGGCTTAATGATCTTTCTGTGTTTAGGAGGAGTACCCTTTTACCATGAGGAATTAAAGGTCTTCAAACGTGAAAGATTTGGAAAGCATTACGGAGAGGCCATCTTTGTACTCTCACATTTCCTCTCATCACTGCCTTTTGTTCTTGCAATTTCCCTCTCTTCGGGGACAATACTTTACCACATGGTGAACTTTCATTCAGGCTTCTCTCATTACTGCTACTTTTGCATGAACATATTTTGCTTCATTTCTGTCACAGAGGGCTGCACATTACTCGTTGCAGCACTCCTACCCGAGCTATTGGTAGCAATTGGAACCGCAACTGGTGTAATTGTATTCATGATGGTGCCATCTAATGTATTCAGAAGTCTGGCAGACCTTCCAAAATTCTTCTGGCGCTATCCAATGTCCTATCTCAGCTACATTACCTGGTCAATACAGGGTCAATTCAAGAATGACCTGATTGGTCTTGAATTTGAACCAAAGGTGGCTGGGGAAACCAAGATAAAGGGTGAACATATACTTCATGCCATGTTTGGAATTAGCACTGATTATTCAAAATGGTGGGACTTAGGAGTTGTAGTTTGCTTCTTGATATGCTATAGAGTGTTGTATTACTTGGCCCTTAAACACAAGGAGAGAGCTTCATCATTGTTGCAGATCAAAAGGACTTTCCTACACATTTTTCTCAGAAGACCCTCTCTGAAGGACAAATATACTTCTTCCAAGAGGCATCATTTGCACCCTTTGGCACTTCAGGAGGGTCTTAACTCTCCAATGTCATAA 2016 0.4142 MELQSNADTAVENKRRVCLFWEDLTVVASNGSNSAEKELLKGLSGYAEPNRIMALIGPSGSGKSTLLAALAGILPSNVRMSGNVVLNGSTRRMTGCKDVCYVTQEDYFLGTLTVKETLTYAARLRLPSDTTRNEIEKVVTNVLAEMGLEDSAETRLGNWHLRGISTGEKRRLSIGIEILTQPHVMFLDEPTSGLDSAASFYVISSLSNIAHDGRIVICSIHQPSGEIFNLFDDLVLLAAGEAVYFGQANMAVKFFADAGFPCPIRRNPPEHFLRCVSPEFDSVTALIKSKIENAASSSLNSLMNMTTEEIKSELVMNYKNSIHSANARRKIREMKKNEEPLVEKIYDTSWQKQLWTLTNRSFLNMTRDFGYYWLRIVFYIIISVSAGCLLFNIGTSNEAIISRGKCDGFIFGLMIFLCLGGVPFYHEELKVFKRERFGKHYGEAIFVLSHFLSSLPFVLAISLSSGTILYHMVNFHSGFSHYCYFCMNIFCFISVTEGCTLLVAALLPELLVAIGTATGVIVFMMVPSNVFRSLADLPKFFWRYPMSYLSYITWSIQGQFKNDLIGLEFEPKVAGETKIKGEHILHAMFGISTDYSKWWDLGVVVCFLICYRVLYYLALKHKERASSLLQIKRTFLHIFLRRPSLKDKYTSSKRHHLHPLALQEGLNSPMS 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01716 671 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 19 264 IPR003439 GO:0005524
Viun1g01716 671 Pfam ABC transporter 40 192 IPR003439 GO:0005524
Viun1g01716 671 CDD ABCG_EPDR 16 246 - -
Viun1g01716 671 Gene3D - 14 257 IPR027417 -
Viun1g01716 671 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 12 631 - -
Viun1g01716 671 SMART AAA_5 49 249 IPR003593 GO:0016887
Viun1g01716 671 Pfam ABC-2 type transporter 353 558 IPR013525 GO:0016020|GO:0140359
Viun1g01716 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 251 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01716 Viun-Chr1 28952458 28962354 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01716 38 233 Calmodulin-binding Proteins AT2G36910 29.048 3.18e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01716 - K05681 aip:107646291 903.279