Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01667 ATGGCATCGGTGCGTGAAGCTCCGTCGTGGAAATTTCACGTGTTTCTGAGCTTCCGAGGAGAAGACACGCGCAACGGTTTTACGGACCACCTCTACGCTGCGTTTAGGGGACGCGGCTTTGCAGTTTTCAGAGACGACGAAGAACTCGAGAGAGGAGAAGTCATCTCGCACGCGCTTCTGAAGGCGATCGACGAGTCTCTGTGCTCCGTGGTGGTTCTCTCGCCGCACTACGCCTCTTCGCGGTGGTGCTTGGACGAGCTCCTCAGGATACTGGAATCGAGAGCGAATTTCGGTCGCAACGTTCTGCCGATCTTCTACGACGTGGATCCCGCAGACGTAAGGCATCAACGAGGAACTTTCGCCGAAGCTTTTGCGAAGCATGTAGAGAGGTTTGGGAGCGATGAGGTTCGGATGTGGAGACAAGCGTTGAAGGACGTCGCGGCTTTGTCTGGCTGGACCTCTAAGGATAAGCGAGAAACAGAACTCATTGAAGAAATTGTTGCAGAGGTGTGGAAAAACTTACAAAGTAAATTGCCATCCTATGATGATGAACTGGTTGGAATTGATTATAGGATAAACAGCATTTATTCACTTTTAAGAACGAATTCACAGGAAGTTCGCTTTATGAGCATATGGGGCATGGGTGGTATTGGAAAGACAACATTAGCCAGGTTTGTCTATAATAAAATCCATGACCAATATGATATCAGTTGCTTTCTTGAGAATGTTAGAGAGGTTTCTAATGAAAGAGACGGTCTGCTTTGCTTACAAAGAAAATTGCTTTCCCATTTAAAAATAAGAAGCATGAGAATTGAAAGTTTGGACCAAGGAAAGGAGACAATACGGAATCTTTTATTCAATAAGAAAGTTCTTCTTGTCCTTGATGATTTAAGTTCTGATATCCAAGTGGAGAATTTAGCTGGGAAGCCAGAATGGTTTGGTCAAGGGAGTAGAGTAATTATAACAACTAGAGATAAGCATCTACTTAAATCACTTCATGTGTGTGAGAACTATGATGTTCAGGTCTTGAATAGTTATGAATCCCTTCAACTTTTTTGCCAAAAAGCGTTCAGAGGAGAAAAGCCTGAAGAAGCTTACTTAGAGTTGTCTAGATCTGTGGTCCAATATGCTGGAGGTGTTCCTTTGGCACTCAAAGTGTTGGGTTCATTTCTCTGTGGAAGAAGTGCTTCCATATGGGAAGACGCTTTGAAAATGTTAAGGAAGGACGCACAAAATGATATTTGCAAGACTCTAAGAATAAGTTATGATGGATTACGAGATAATGAGAAGGCTATATTTCTAGATATTGCTTGTTTTTTCAAAGGAAACACCAAAGATGATGTAACACGAATATTGGAAAATTGTGATTTCAATCCACTGATCGGTATAGAAGTTCTAATTGAAAAATCATTAGTAACTTATGATGGATTGCATTTGGGGATGCACGATTTGCTTCAAGAAATGGGTAGGAATATTGTTCTCCAACAATCTCCTAATGATGCCAGCAAGAGGAGTAGGCTGTGGACACTCAAAGACATTGATCAAGTATTGAGAAATAACAATGGAACCGAATCCATTCAAGCTATAGTTTTAAATTTGCCTGAGCCTTATGAAACATGTTGGAATCCGGATGCTTTTTCAAAGATGAGTAATCTAAGATTGCTCATGATATTGAATAAACTGCAACTTCCGCTTGGTCTCAAATGTCTTCCCAGTGGATTAAAAGTTCTTGTGTGGAAGGAATATCCTCTTGAATCCCTGCCAGTTGGAGCCCAACTGGATGAACTCGTTGAGCTTCATATGTGTCAAAGCAAAATAAAACACCTTTGGGGAGGAACAAAGTTTGTGGAAAATTTGAAGATCATCAATTTGAGAAATTGCAATAATCTACACAGAACTCCAGATTTCACTGGAATTCCAAATCTTGAAAAATTGGATCTTGAAGGCTGTGTAAACCTTGTTGAGGTTCATGCATCTCTTGGACTTCTTAAAAAGCTTTCGTACCTGACATTTGAAGATTGCAGAAATCTCAAAATCCTTCCGAGAAAATTGTTATTAGACTCTTTAAATCGTCTAGTTCTTTCAGGCTGCTCCGCAGTTAGAAATCTTCCTGAGTTTGGAGAAAGTATGAAAAGTCTATCCGTGCTTGCTTTAGAGGAGACTTCCATAGCTGAACTACCTGTGTCTGTTGGTCACTTGACAAGTCTTACTAACTTGCTTTTAGAGGGTTGCAAAAATATTGTGCGCCTTCCAAATACCATTTCTAATTTGAAATCTCTCAGAAGGCTCAATATCTCCGGTTGTTCAAAAATTTCTAAACTGCCTGATAATTTGAATGAAAATGAGGCTTTGGAATCTTTAAATGCAAGCGAAACTGCTATTAGGGAAGTGCCTTCATCCATTGTTCTTCTAAAAAATCTCAGACTGCTTTTATTTCGTGGATGCCAAGACCTAGCATCAAACTCATGGAGCTCACTTCTCCCTTTTGAGAAGATTCTCCGGTTTAATAGTCATCCAACAACAAAGAGATTGGTCTTGCCTTCTTTTTCTGGTCTATCCTCATTGAGGAAACTGGACTTGAGTTATTGCAATCTCCATGATGGATCAATTCCTGAAGATCTTGGCTGCTTATCATCATTGGTAACATTAGATCTAAGTGGAAACAATTTTGTATGTTTTCCTGGTTGTATCTCTGAACTTTTGAAGCTAGAAAGACTATTATTGAAGTGCTGCCCGAGGCTGGAGTCATTTCCTAAGCTGCCACCAGAAGTACATTATGTAAATGCAAGTGATTGTGGTTCAATGAAACCTTTATCAGATCCGCAACAGATATGGGGTCATTTGGTCTCATTTGCCTTTGATAAGTTGCAAGATGCCAGTAACTTCAAAACCTTATTGGTAAGTCCAGGAAACGAAATTCCATCATTTTTTTTCTATCAAAAGCATCTCAACCAAGTCCAAGACATAGAATACTTGAAAGAAAACTACATCTGGGCCGACTCTACTGTGTCAATACCGATGGACATAGCTCCACTTCGTCACCGGTATCATAGAAGTGAATGGTGGGGAATTTTGGTTTCCCTAGTTGTAGAAGATGTGGAGTCTTCACCTTCACAGGAATATCGCATTGGTTGGATTTCAAAGGTTCCTAGTCTCAAAAATATTTTGCAGCAGTTGTGTCACAAGACAGAGCAGGGACTCATCTCTGGAATCCAAAATCATAAATATCCTCACCTGTTGATTTTATATATTCCGATTTATAGGGCTCGCTGGTTTTATGTTCATGACAAATTTCAATTAATATTTTACTCTTCCAGTCTCAAGAGCAAATTAGTGATAAAGAAATGTGGATGGCGCATATTATGTAAGGAAGATGCTGAAAACTGGCGCACAAACCTGTCTGAATGCAACACTAATTCCGCCAATCAATGTGTTGCAAATCCAAGGGACGGTCGCTTATCTCCACACTTTTCATCCTGGAGATGGATATCCCGTCTCAAGGTTCCCCAACACTGCAAGACTTTCCTCTTGGCCATCCTCTGTGATCGCTTGCCCGCTAATGAAAGGTGCTCATTCTGCTGCTTGGAAGGGACTGTCATCCATGTTTTACGAGACTGTACCAGAGCTACTGCAATCTGGGTTCAAATGGTTCCTCCTGAGGTGTGTGATGAGTTTTTTTCAACATCTCTTCATGACTGGATGCACAGGTTCCTTCTGAAGCTCTGGTTTCCCGACAGGGACTATTATGCTGACTGTTTGAGGTTTACCATCACGATCTGGCTACTTTGGAAGGATAGAAATAGTTCCATCTTCAAGCGAAATTCTCCAACTCCAACAGATAATGATGGATTGTATTCTCTGATTCAGTCTCTAGTAAAAGAATATGCAATTCTTTTGCATCTGAAAGGGGAAGAGGGTACTTCTGCTGCGAATTCTCTCTCCCAGAACTCACGTCTAAAACTTTTTGTGAAACTGAACGTGGATGGCTGTTGTAATGGCAATCCTGGAAATGCTGGTTATGGGGGTCTCTTTCGTGACGTAGAGGGGAAGTGGCTTGGTGGGTTCTATGGATCTCTTGGCCTTGCAACGAATGTGAGAGCTGAGCTTTATGCCATTTGTCAGGGTTTGATCGCAGCTTGGGATTTGGGTTACAGAACCATGCTGGTTGAAACTGACTCATTAGAAGCAATAAATCTCATTAAGGAAGCCAATATTGAGGATTGTGCCTACAGTGGCTTGCTTGCTGACATACGTTCCCTCATGCAAAGAAATTGGTCCTTGGACTTGATCCATTCTCTTAGACAAGATAATGCATGTGCAAACATGTTATCAAAGCTGGGAGCTGAGCAGCATGAGGTCTATTGCTTCCTGGCTCATCCACCTCAGCAGCTTCAACCGGCATTGGTGGCTGATGCCCTGCAAGTTCAACTTCCTTGCCTCTAG 4443 0.4148 MASVREAPSWKFHVFLSFRGEDTRNGFTDHLYAAFRGRGFAVFRDDEELERGEVISHALLKAIDESLCSVVVLSPHYASSRWCLDELLRILESRANFGRNVLPIFYDVDPADVRHQRGTFAEAFAKHVERFGSDEVRMWRQALKDVAALSGWTSKDKRETELIEEIVAEVWKNLQSKLPSYDDELVGIDYRINSIYSLLRTNSQEVRFMSIWGMGGIGKTTLARFVYNKIHDQYDISCFLENVREVSNERDGLLCLQRKLLSHLKIRSMRIESLDQGKETIRNLLFNKKVLLVLDDLSSDIQVENLAGKPEWFGQGSRVIITTRDKHLLKSLHVCENYDVQVLNSYESLQLFCQKAFRGEKPEEAYLELSRSVVQYAGGVPLALKVLGSFLCGRSASIWEDALKMLRKDAQNDICKTLRISYDGLRDNEKAIFLDIACFFKGNTKDDVTRILENCDFNPLIGIEVLIEKSLVTYDGLHLGMHDLLQEMGRNIVLQQSPNDASKRSRLWTLKDIDQVLRNNNGTESIQAIVLNLPEPYETCWNPDAFSKMSNLRLLMILNKLQLPLGLKCLPSGLKVLVWKEYPLESLPVGAQLDELVELHMCQSKIKHLWGGTKFVENLKIINLRNCNNLHRTPDFTGIPNLEKLDLEGCVNLVEVHASLGLLKKLSYLTFEDCRNLKILPRKLLLDSLNRLVLSGCSAVRNLPEFGESMKSLSVLALEETSIAELPVSVGHLTSLTNLLLEGCKNIVRLPNTISNLKSLRRLNISGCSKISKLPDNLNENEALESLNASETAIREVPSSIVLLKNLRLLLFRGCQDLASNSWSSLLPFEKILRFNSHPTTKRLVLPSFSGLSSLRKLDLSYCNLHDGSIPEDLGCLSSLVTLDLSGNNFVCFPGCISELLKLERLLLKCCPRLESFPKLPPEVHYVNASDCGSMKPLSDPQQIWGHLVSFAFDKLQDASNFKTLLVSPGNEIPSFFFYQKHLNQVQDIEYLKENYIWADSTVSIPMDIAPLRHRYHRSEWWGILVSLVVEDVESSPSQEYRIGWISKVPSLKNILQQLCHKTEQGLISGIQNHKYPHLLILYIPIYRARWFYVHDKFQLIFYSSSLKSKLVIKKCGWRILCKEDAENWRTNLSECNTNSANQCVANPRDGRLSPHFSSWRWISRLKVPQHCKTFLLAILCDRLPANERCSFCCLEGTVIHVLRDCTRATAIWVQMVPPEVCDEFFSTSLHDWMHRFLLKLWFPDRDYYADCLRFTITIWLLWKDRNSSIFKRNSPTPTDNDGLYSLIQSLVKEYAILLHLKGEEGTSAANSLSQNSRLKLFVKLNVDGCCNGNPGNAGYGGLFRDVEGKWLGGFYGSLGLATNVRAELYAICQGLIAAWDLGYRTMLVETDSLEAINLIKEANIEDCAYSGLLADIRSLMQRNWSLDLIHSLRQDNACANMLSKLGAEQHEVYCFLAHPPQQLQPALVADALQVQLPCL 1480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01667 1480 SMART LRR_typ_2 852 876 IPR003591 -
Viun1g01667 1480 SMART LRR_typ_2 757 781 IPR003591 -
Viun1g01667 1480 SMART LRR_typ_2 877 900 IPR003591 -
Viun1g01667 1480 SMART LRR_typ_2 710 733 IPR003591 -
Viun1g01667 1480 Gene3D Ribonuclease Inhibitor 705 975 IPR032675 -
Viun1g01667 1480 Gene3D Ribonuclease Inhibitor 491 704 IPR032675 -
Viun1g01667 1480 ProSiteProfiles TIR domain profile. 10 178 IPR000157 GO:0007165
Viun1g01667 1480 SUPERFAMILY L domain-like 531 823 - -
Viun1g01667 1480 ProSiteProfiles RNase H type-1 domain profile. 1319 1449 IPR002156 GO:0003676|GO:0004523
Viun1g01667 1480 Pfam Leucine Rich Repeat 596 614 IPR011713 -
Viun1g01667 1480 PRINTS Disease resistance protein signature 284 298 - -
Viun1g01667 1480 PRINTS Disease resistance protein signature 377 391 - -
Viun1g01667 1480 PRINTS Disease resistance protein signature 208 223 - -
Viun1g01667 1480 PRINTS Disease resistance protein signature 755 771 - -
Viun1g01667 1480 Pfam NB-ARC domain 194 419 IPR002182 GO:0043531
Viun1g01667 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 436 IPR027417 -
Viun1g01667 1480 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 152 IPR035897 -
Viun1g01667 1480 Gene3D - 1322 1450 IPR036397 GO:0003676
Viun1g01667 1480 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 176 - -
Viun1g01667 1480 SUPERFAMILY L domain-like 819 939 - -
Viun1g01667 1480 Gene3D - 342 426 IPR042197 -
Viun1g01667 1480 SUPERFAMILY Ribonuclease H-like 1323 1451 IPR012337 -
Viun1g01667 1480 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 706 IPR044974 GO:0006952
Viun1g01667 1480 Pfam Reverse transcriptase-like 1326 1445 IPR002156 GO:0003676|GO:0004523
Viun1g01667 1480 SUPERFAMILY "Winged helix" DNA-binding domain 413 517 IPR036390 -
Viun1g01667 1480 Pfam TIR domain 11 186 IPR000157 GO:0007165
Viun1g01667 1480 FunFam Disease resistance protein (TIR-NBS-LRR class) 344 426 - -
Viun1g01667 1480 Gene3D - 176 340 IPR027417 -
Viun1g01667 1480 SMART till_3 11 149 IPR000157 GO:0007165
Viun1g01667 1480 CDD RNase_H_like 1325 1445 IPR044730 -
Viun1g01667 1480 Gene3D - 6 175 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01667 Viun-Chr1 28402595 28414918 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01667 5 812 WRKY Transcription Factor Family AT4G12020 34.179 3.65e-108 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01667 - - var:108321227 2755.7