Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01666 ATGGCGCCAAAACGAAAACCTTCTTCTCCAATCTCCATCGGTAACTGCGAGGTTACTGTCGAGGCCACTCGTTTCACCTGTAACTCCGACTCAAACGTCGTCGTAATCTCGCTTCCCCGAAGTGGAAAGGTCAAAGTGTCAGTTGTTGAAAACCGTGAAAACGCTTATGAGGATTTTATAACCGGTGATAAAGAGCATGAGTTCGTGCTGGTTAATCCTAAGGATGCTGATTCTGTTAGTAAATCCTACCTTCAGGAAGTATTACAATTGTACAGGACTGAGCTACCTGGAATGAATTATGCCGCAAATACCGGAAAACAATCCAAGTTTCTTGAGAGATGTGTGACTAATGGGAAATATCGAACCCTACTGGTAAAGTCCACTCGTGTTGCAAATTCAGGAAAGGTTATAGCCGCAATTACATACCAAATCATCCCTGCAGATACAGAATTTGCAGAGGTCCCACTTGCAGCTGTCAATGCAATCCATCAACGAAAGGGTTTTGGTCATTTATTGGTTCTGGAGCTACGGAAAAGACTTCAAAGTGTTGGCATCCGTTCTATTTTATGCTGGGGAGACAAGGAATCAGAAGGGTTTTGGCTTAAACAGGGTTTTGTAGAAATAGCACAGGTGGATACCAAAGGAAGGGCCCGCAGGTTACCTGTAAAATCTGATATTCAGAAATCATTATGCTTTCCTGGTGGTTCAACTCTCATGGTTTGCAACGTAATGAAAGAATGCTTAGCCGATGACGCTAACACTACAAAGTGTCTCCCTTCACAGTTTCATCAGAATTCCTTTACACCTGCCATTGCTGAAGATGAGCAGCTGAAGTTTTCGGGATCGGACAGTCATAATCCTAAGAAAGGCTGTAGTAGCATTGCTCCATTTGCCCAAGTAAACGACGATAGACAGTCCACTGGTGCAGAAAGTTCACAGGATGGAATTGGTGCTAATGTGAATTATTGTTCTCAATCTACAAAAGGTGCAAAGAGGACCTGGGAAGCCTCTTTATCTTCATTGAAGTCAAAAAGAGTGAAGGGGGGCCAGCTGGTTGGCTATCAATCAGGTTCTAGCTGCGGTTTTATCTTAGAGACTGATGAGGCCAATTCCTGTTTTGTAGAGGCCCTTCACGATCCTTCGATTATAGATGGTTCTGAAAAATGTGTCGAGAATTGTTTACATTTAGAAGCTCCTATCAACATAGAACCGCCATCTACTAAACAATGCTTTAGAATTATGTTGATGAATATTGCTGATGATGCTAAGAAAACACAGCTCACAAAGGTGATTGAAGACCTTGGTGGAACTGTATCCACTTGTGGAAGTATGACCACACACGTTGTCACAGGACAAGTGAGAAAAACTCTGAATTTCTGTACCGCCCTTTGTTCAGGTGCTTGGGTGGTCTCATCAAGTTGGTTAAAAGAAAGTTTTCGGGAAGGCAGATTTGTTGATGAACTGCCTCACATACTGAACGATCCGGATTATTCGCTGAAGTACAAATGCGATTTAAAGAGTGCAGTTTTACGGGCAAAAGCTAGCTCTCATACACTGTTCAAGGGATATAATATATGTATTGCAGCTCATGTTCAAACTCCCGCTAAAATATTGTCTGCAATTGTCATGTCCGCAGGTGGTAATGTGATTAGTAGAGTGGAGAAAGTAAAAGAAACATCAACAACAATCTTTGTGACAGGCGAGGAAGATACGGAAGAAGCAATGATAGCTGCAAAGAAAGGGATCCGGACTTTCAGTTGCGATTGGTTTATGAACTGTGTCATGAGACAAGAACTTGACTTGGAAGCCCCCCAGTTTGCTGAATCCTTATAA 1833 0.425 MAPKRKPSSPISIGNCEVTVEATRFTCNSDSNVVVISLPRSGKVKVSVVENRENAYEDFITGDKEHEFVLVNPKDADSVSKSYLQEVLQLYRTELPGMNYAANTGKQSKFLERCVTNGKYRTLLVKSTRVANSGKVIAAITYQIIPADTEFAEVPLAAVNAIHQRKGFGHLLVLELRKRLQSVGIRSILCWGDKESEGFWLKQGFVEIAQVDTKGRARRLPVKSDIQKSLCFPGGSTLMVCNVMKECLADDANTTKCLPSQFHQNSFTPAIAEDEQLKFSGSDSHNPKKGCSSIAPFAQVNDDRQSTGAESSQDGIGANVNYCSQSTKGAKRTWEASLSSLKSKRVKGGQLVGYQSGSSCGFILETDEANSCFVEALHDPSIIDGSEKCVENCLHLEAPINIEPPSTKQCFRIMLMNIADDAKKTQLTKVIEDLGGTVSTCGSMTTHVVTGQVRKTLNFCTALCSGAWVVSSSWLKESFREGRFVDELPHILNDPDYSLKYKCDLKSAVLRAKASSHTLFKGYNICIAAHVQTPAKILSAIVMSAGGNVISRVEKVKETSTTIFVTGEEDTEEAMIAAKKGIRTFSCDWFMNCVMRQELDLEAPQFAESL 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01666 610 Gene3D BRCT domain 402 516 IPR036420 -
Viun1g01666 610 Gene3D - 64 221 - -
Viun1g01666 610 ProSiteProfiles BRCT domain profile. 413 492 IPR001357 -
Viun1g01666 610 ProSiteProfiles BRCT domain profile. 515 599 IPR001357 -
Viun1g01666 610 SUPERFAMILY BRCT domain 412 495 IPR036420 -
Viun1g01666 610 Pfam BRCA1 C Terminus (BRCT) domain 419 479 IPR001357 -
Viun1g01666 610 Pfam BRCA1 C Terminus (BRCT) domain 517 594 IPR001357 -
Viun1g01666 610 SMART BRCT_7 517 597 IPR001357 -
Viun1g01666 610 SMART BRCT_7 403 482 IPR001357 -
Viun1g01666 610 Pfam Acetyltransferase (GNAT) family 130 205 IPR000182 GO:0016747
Viun1g01666 610 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 64 229 - -
Viun1g01666 610 CDD BRCT_PAXIP1_rpt6_like 519 600 - -
Viun1g01666 610 SUPERFAMILY BRCT domain 515 600 IPR036420 -
Viun1g01666 610 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 81 212 IPR016181 -
Viun1g01666 610 CDD NAT_SF 130 191 - -
Viun1g01666 610 Gene3D BRCT domain 517 609 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01666 Viun-Chr1 28395750 28401777 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Viun1g01666 BRCT 7.5e-05 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01666 - - gmx:100806087 977.622