Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01665 ATGGCGCCAAAACGAAAACCTTCTTCTCCAATCTCCATCGGTAACTGCGAGGTTACTGTCGAGGCCACTCGTTTCACCTGTAACTCCGACTCAAACGTCGTCGTAATCTCGCTTCCCCGAAGTGGAAAGGTCAAAGTGTCAGTTGTTGAAAACCGTGAAAACGCTTATGAGGATTTTATAACCGGTGATAAAGAGCATGAGTTCGTGCTGGTTAATCCTAAGGATGCTGATTCTGTTAGTAAATCCTACCTTCAGGAAGTATTACAATTGTACAGGACTGAGCTACCTGGAATGAATTATGCCGCAAATACCGGAAAACAATCCAAGTTTCTTGAGAGATGTGTGACTAATGGCAGGAAATATCGAACCCTACTGGTAAAGTCCACTCGTGTTGCAAATTCAGGAAAGGTTATAGCCGCAATTACATACCAAATCATCCCTGCAGATACAGAATTTGCAGAGGTCCCACTTGCAGCTGTCAATGCAATCCATCAACGAAAGGGTTTTGGTCATTTATTGGTTCTGGAGCTACGGAAAAGACTTCAAAGTGTTGGCATCCGTTCTATTTTATGCTGGGGAGACAAGGAATCAGAAGGGTTTTGGCTTAAACAGGGTTTTGTAGAAATAGCACAGGTGGATACCAAAGGAAGGGCCCGCAGGTTACCTGTAAAATCTGATATTCAGAAATCATTATGCTTTCCTGGTGGTTCAACTCTCATGGTTTGCAACGTAATGAAAGAATGCTTAGCCGATGACGCTAACACTACAAAGTGTCTCCCTTCACAGTTTCATCAGAATTCCTTTACACCTGCCATTGCTGAAGATGAGCAGCTGAAGTTTTCGGGATCGGACAGTCATAATCCTAAGAAAGGCTGTAGTAGCATTGCTCCATTTGCCCAAGTAAACGACGATAGACAGTCCACTGGTGCAGAAAGTTCACAGGATGGAATTGGTGCTAATGTGAATTATTGTTCTCAATCTACAAAAGGTGCAAAGAGGACCTGGGAAGCCTCTTTATCTTCATTGAAGTCAAAAAGAGTGAAGGGGGGCCAGCTGGTTGGCTATCAATCAGGTTCTAGCTGCGGTTTTATCTTAGAGACTGATGAGGCCAATTCCTGTTTTGTAGAGGCCCTTCACGATCCTTCGATTATAGATGGTTCTGAAAAATGTGTCGAGAATTGTTTACATTTAGAAGCTCCTATCAACATAGAACCGCCATCTACTAAACAATGCTTTAGAATTATGTTGATGAATATTGCTGATGATGCTAAGAAAACACAGCTCACAAAGGTGATTGAAGACCTTGGTGGAACTGTATCCACTTGTGGAAGTATGACCACACACGTTGTCACAGGACAAGTGAGAAAAACTCTGAATTTCTGTACCGCCCTTTGTTCAGGTGCTTGGGTGGTCTCATCAAGTTGGTTAAAAGAAAGTTTTCGGGAAGGCAGATTTGTTGATGAACTGCCTCACATACTGAACGATCCGGATTATTCGCTGAAGTACAAATGCGATTTAAAGAGTGCAGTTTTACGGGCAAAAGCTAGCTCTCATACACTGTTCAAGGGATATAATATATGTATTGCAGCTCATGTTCAAACTCCCGCTAAAATATTGTCTGCAATTGTCATGTCCGCAGGTGGTAATGTGATTAGTAGAGTGGAGAAAGTAAAAGAAACATCAACAACAATCTTTGTGACAGGCGAGGAAGATACGGAAGAAGCAATGATAGCTGCAAAGAAAGGGATCCGGACTTTCAGTTGCGATTGGTTTATGAACTGTGTCATGAGACAAGAACTTGACTTGGAAGCCCCCCAGTTTGCTGAATCCTTATAA 1836 0.4254 MAPKRKPSSPISIGNCEVTVEATRFTCNSDSNVVVISLPRSGKVKVSVVENRENAYEDFITGDKEHEFVLVNPKDADSVSKSYLQEVLQLYRTELPGMNYAANTGKQSKFLERCVTNGRKYRTLLVKSTRVANSGKVIAAITYQIIPADTEFAEVPLAAVNAIHQRKGFGHLLVLELRKRLQSVGIRSILCWGDKESEGFWLKQGFVEIAQVDTKGRARRLPVKSDIQKSLCFPGGSTLMVCNVMKECLADDANTTKCLPSQFHQNSFTPAIAEDEQLKFSGSDSHNPKKGCSSIAPFAQVNDDRQSTGAESSQDGIGANVNYCSQSTKGAKRTWEASLSSLKSKRVKGGQLVGYQSGSSCGFILETDEANSCFVEALHDPSIIDGSEKCVENCLHLEAPINIEPPSTKQCFRIMLMNIADDAKKTQLTKVIEDLGGTVSTCGSMTTHVVTGQVRKTLNFCTALCSGAWVVSSSWLKESFREGRFVDELPHILNDPDYSLKYKCDLKSAVLRAKASSHTLFKGYNICIAAHVQTPAKILSAIVMSAGGNVISRVEKVKETSTTIFVTGEEDTEEAMIAAKKGIRTFSCDWFMNCVMRQELDLEAPQFAESL 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01665 611 ProSiteProfiles BRCT domain profile. 516 600 IPR001357 -
Viun1g01665 611 Gene3D BRCT domain 403 517 IPR036420 -
Viun1g01665 611 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 82 213 IPR016181 -
Viun1g01665 611 Pfam BRCA1 C Terminus (BRCT) domain 518 595 IPR001357 -
Viun1g01665 611 Pfam BRCA1 C Terminus (BRCT) domain 420 480 IPR001357 -
Viun1g01665 611 Pfam Acetyltransferase (GNAT) family 131 206 IPR000182 GO:0016747
Viun1g01665 611 SUPERFAMILY BRCT domain 413 496 IPR036420 -
Viun1g01665 611 SMART BRCT_7 404 483 IPR001357 -
Viun1g01665 611 SMART BRCT_7 518 598 IPR001357 -
Viun1g01665 611 CDD BRCT_PAXIP1_rpt6_like 520 601 - -
Viun1g01665 611 Gene3D - 64 222 - -
Viun1g01665 611 CDD NAT_SF 131 192 - -
Viun1g01665 611 ProSiteProfiles BRCT domain profile. 414 493 IPR001357 -
Viun1g01665 611 SUPERFAMILY BRCT domain 516 601 IPR036420 -
Viun1g01665 611 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 64 230 - -
Viun1g01665 611 Gene3D BRCT domain 518 610 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01665 Viun-Chr1 28395750 28401777 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Viun1g01665 BRCT 7.6e-05 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01665 - - gmx:100806087 973