Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01647 ATGGTCGCATTGTTCTCTCCTCCTCTCTTCTCAACCAAAGGGTGGCTCTTAGAGGAGGAGCCATTCGGCTATAATAATACCCATAATCTCTCCTACAAAGATGATGCGTCTTCTCAGTACTCCTTTCCCTATCAATTTTATTCACCACAGACACAGATTGAGGTTGAAATTGAAAGGTCCACTGCACCATCCTCTGACCCTGCCATGGTCAAGAAACTTAGCCACAATGCTAGCGAACGTGATCGCCGCAAGAAGGTCAACAACTTGGTTTCTTCACTTCGCTCACTTCTTCCAATGGCAGATCAAACGAAAAAAATGAGCATTCCTGCAACAGTTTCCAGAGTGTTGAAATACATACCTGAACTACAACAGCAAGTGCAAGCACTAACAAAGAGAAAAGAGGAGCTTCTGTGCAGAATTTCTCGGCAATTGCAAGGAGAAGCAGTGAACAAAGAATCTCAGAGAAAAATTTCCCATCACAACTCTTCTTTTGTTGTCTCAACGACTAGGCTTAACGATTGTGAAGCTGTAGTTCACATTTCATCTCATGAGACACACAAGGCTCCACTATCAGAGATTCTGCAGTGCTTAGAAAATGATGGCCTTTTTCTGCTACATGCTTCTTCCTCAGAAACCTTTGGAGGAAGGTTCTTCTACAATTTGCATTTTCAGGTGGAGAAAACTGATAGATTAGAGACCGAGATTTTAACTGAGAAGCTTTTACCAATATATGAGAAGCAAAGGATTTTCTAG 753 0.4197 MVALFSPPLFSTKGWLLEEEPFGYNNTHNLSYKDDASSQYSFPYQFYSPQTQIEVEIERSTAPSSDPAMVKKLSHNASERDRRKKVNNLVSSLRSLLPMADQTKKMSIPATVSRVLKYIPELQQQVQALTKRKEELLCRISRQLQGEAVNKESQRKISHHNSSFVVSTTRLNDCEAVVHISSHETHKAPLSEILQCLENDGLFLLHASSSETFGGRFFYNLHFQVEKTDRLETEILTEKLLPIYEKQRIF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01647 250 Coils Coil 119 139 - -
Viun1g01647 250 Gene3D - 64 161 IPR036638 GO:0046983
Viun1g01647 250 FunFam Transcription factor ORG2 66 151 - -
Viun1g01647 250 MobiDBLite consensus disorder prediction 59 84 - -
Viun1g01647 250 Pfam Helix-loop-helix DNA-binding domain 71 123 IPR011598 GO:0046983
Viun1g01647 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 122 IPR011598 GO:0046983
Viun1g01647 250 CDD bHLH_AtORG2_like 71 144 - -
Viun1g01647 250 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 67 239 - -
Viun1g01647 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 141 IPR036638 GO:0046983
Viun1g01647 250 SMART finulus 76 128 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01647 1 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 42.688 4.94e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun1g01647 HLH 4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01647 - - gmx:100803424 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01647 1 28188824 28191182 Viun1g01647 1 28188824 28191182 ECH