Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01642 ATGGGGATGGCCGCAGCAGAGTCGCAGTTTCATGTGTTGGCCGTTGATGACAGCATCATAGACAGGAAACTCATCGAGAGGCTCCTCAGAACCTCTTCCTACCAAGTTACTACAGTTGATTCTGGTAGCAAGGCTTTGGAGTTTCTGGGGTTGCGTGAAAATCAAAACACCAACCCAAGTACGCCATCTGTTTCTCCCAACTACAACCGCCATCAGGAGGTGGAGGTGAATCTTGTGATAACAGATTACTGTATGCCTGGCATGACAGGCTATGACTTGCTTAAGAAAATCAAGGAATCTTCATCTTTGAGAAACATACCAGTGGTGATTATGTCATCTGAGAATGTGCCTTCAAGGATCAGCAGATGCTTGGAGGAAGGAGCAGAAGAATTTTTCTTGAAGCCTGTGAGGCTGTCAGATTTGAACAAGCTTAAACCCCACATGAAGAAAACTAAGTTGAAAGATGAAAGGCAAGGAACAGCACAAGAGATTGAAAACTCAGAAGTTCTACAGCAACAAGATCAGCAACAAGAAGCACCAAAACCCCAAGATCCTCAGCCAGAGTCAGAGTCACATCCACAACCAACTATAGAACAACAGCAACAATCACTACAACAACCCAACAATAACAAGAGGAAGACCATGGAACAGGGGCTTTCACCTGAGACTGACAGAACAAGACCAAGATACAGTGGCATAGCCACTGTGGTATGA 714 0.4496 MGMAAAESQFHVLAVDDSIIDRKLIERLLRTSSYQVTTVDSGSKALEFLGLRENQNTNPSTPSVSPNYNRHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHMKKTKLKDERQGTAQEIENSEVLQQQDQQQEAPKPQDPQPESESHPQPTIEQQQQSLQQPNNNKRKTMEQGLSPETDRTRPRYSGIATVV 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01642 237 CDD REC_typeA_ARR 12 144 - -
Viun1g01642 237 MobiDBLite consensus disorder prediction 167 216 - -
Viun1g01642 237 MobiDBLite consensus disorder prediction 167 237 - -
Viun1g01642 237 SUPERFAMILY CheY-like 9 143 IPR011006 -
Viun1g01642 237 Gene3D - 11 226 - -
Viun1g01642 237 ProSiteProfiles Response regulatory domain profile. 11 149 IPR001789 GO:0000160
Viun1g01642 237 Pfam Response regulator receiver domain 12 143 IPR001789 GO:0000160
Viun1g01642 237 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 202 IPR045279 GO:0009736
Viun1g01642 237 SMART REC_2 10 145 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01642 Viun-Chr1 28128864 28130888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01642 1 237 Response Regulator Gene Family AT3G57040 61.600 2.01e-96 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun1g01642 Response_reg 2.4e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01642 K14492 - gmx:100788079 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01642 1 28128864 28130888 Viun1g01642 1 28128864 28130888 ECH