Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01596 ATGACAACAGCAATTGCTATAGAGGATGTAAGGAGAGAAGTAAAGATATTGCGAGCTTTGACTGGGCACAAGAATCTGGTGCAATTCTATGATGCCTATGAAGACAACGATAATGTTTATATAGTTATGGAGTTATGCAAAGGAGGTGAACTGCTTGATAAGATTCTTTCCAGGGGTGGAAAGTACTCAGAAGAAGATGCAAGAACTGTTATGATTCAGATATTAAGTGTGGTAGCTTTCTGTCATCTGCAGGGTGTTGTTCATCGTGATCTCAAGCCAGAGAATTTTCTCTATATTTCTGAGGAAAATTCCACTCTGAAGGTCATTGATTTTGGACTCTCTGACTATGTGAAGCCAGATGAAAGGTTGAATGATATTGTTGGAAGTGCATATTATGTAGCTCCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCTTACATTCTTCTATGTGGAAGCCGACCCTTTTGGGCAAGGACAGAATCTGGCATATTCCGGGCTGTCCTGAAGGCAGATCCAAGTTTTGATGAAGCTCCTTGGCCATCTTTATCAGCTGATGCAGTAGATTTTGTAAAGAGACTGTTGAACAAAGATTATCGGAAAAGGCTAACTGCAGCTCAGGCTCTCAGTCATCCATGGCTGACGAGTCATTGTGATGATGTGAAGATACCTTTTGATATGATAATCCACAAGCTTGTTAAAGCTTATATATGCTCATCTTCTTTACGCAAATCAGCATTAGGGGCTCTTGCAAAGACATTAACATTAGTGCAGCTAGCATATCTGAGAGAACAGTTCAACATGTTAGGGCCAAACAAAAGTGGGTTAATCTCCATGCAGAACTTCAAGACGGGTATTTTGAGGAGTGTCACCGATGCCTCAAAGGATTCAAGGGTCTTAGATTATGTGAACATGGTTAGTTCAATCCAATATCGCAAATTAGATTTTGAGGAATTTTGTGCTGCTGCTATAAGTGTCCATCAGCTAGAGGGCATGGAGAGCTGGGAGCAACATGCAAGGCGTGCCTATGAGTTGTTTGAAAAGGAAGGAAATAGACCAATTATGATTGAAGAGCTTGCCTCGGAACTTGGTCTTAGCCCTTCAGTACCAATTCATGTGGTACTGCAAGATTGGATAAGACACTCAGATGGGAAGCTTAGCTTCTTGGGGTTTGTGAGACTCCTGCATGGCGTTTCTTCTCGCACATTTCAGAAGGCTTGA 1248 0.4159 MTTAIAIEDVRREVKILRALTGHKNLVQFYDAYEDNDNVYIVMELCKGGELLDKILSRGGKYSEEDARTVMIQILSVVAFCHLQGVVHRDLKPENFLYISEENSTLKVIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSADAVDFVKRLLNKDYRKRLTAAQALSHPWLTSHCDDVKIPFDMIIHKLVKAYICSSSLRKSALGALAKTLTLVQLAYLREQFNMLGPNKSGLISMQNFKTGILRSVTDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISVHQLEGMESWEQHARRAYELFEKEGNRPIMIEELASELGLSPSVPIHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRTFQKA 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01596 415 Gene3D - 249 403 - -
Viun1g01596 415 Gene3D Phosphorylase Kinase; domain 1 3 51 - -
Viun1g01596 415 CDD STKc_CAMK 6 222 - -
Viun1g01596 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Viun1g01596 415 SUPERFAMILY Protein kinase-like (PK-like) 6 252 IPR011009 -
Viun1g01596 415 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 391 - -
Viun1g01596 415 Pfam Protein kinase domain 8 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01596 415 FunFam CDPK-related kinase 1 2 50 - -
Viun1g01596 415 SUPERFAMILY EF-hand 253 406 IPR011992 -
Viun1g01596 415 FunFam CDPK-related kinase 1 52 239 - -
Viun1g01596 415 Gene3D Transferase(Phosphotransferase) domain 1 52 241 - -
Viun1g01596 415 SMART serkin_6 3 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01596 415 ProSiteProfiles Protein kinase domain profile. 1 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01596 415 FunFam CDPK-related kinase 1 235 407 - -
Viun1g01596 415 Gene3D - 244 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01596 Viun-Chr1 27655459 27659956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01596 1 413 EF-hand Containing Proteins AT3G50530 71.011 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Viun1g01596 Pkinase 8.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01596 - - gmx:100803625 785.408