LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun1g01595	ATGGGGCTGTGTCATGGAAAACCCGTTGAAACCTCACGAAGTGAAGGTGGGCACCACGTTTTCCCCGGCGAGAAAGAGGTGGTGGTGGCTGCGAGTCCCAAAACCTCCACGAAAGGTTCAAAGTTTCCGTTTTACAGCCCAAGCCCGTTGCCGAGCCTGTTCAAGAACTCGCCGGCGAACTCTAGTGTGAGTTCGACTCCTCTGCGGCTCTTCAAGCGGCCCTTTCCGCCTCCGTCGCCGGCGAAGCACATTCGGGCCTTACTGGCCCGCCGCCACGGCTCCGTCAAGCCCAATGAAGCCTCCATCCCAGAAGGGAGTGAGTGTGAGGTTGGGCTCGACAAGAGCTTCGGCTTCTCCAACCACTTCCACACTCACTATGAGCTCGGGCCCGAAGTGGGCCGTGGCCACTTTGGCTACACTTGCTCTGCCAAGGGAAGAAAGGGCGCCTTCAAGGGTCATGATGTTGCTGTCAAAGTCATTCCAAAGTCCAAGATGACAACAGCAATTGCTATAGAGGATGTAAGGAGAGAAGTAAAGATATTGCGAGCTTTGACTGGGCACAAGAATCTGGTGCAATTCTATGATGCCTATGAAGACAACGATAATGTTTATATAGTTATGGAGTTATGCAAAGGAGGTGAACTGCTTGATAAGATTCTTTCCAGGGGTGGAAAGTACTCAGAAGAAGATGCAAGAACTGTTATGATTCAGATATTAAGTGTGGTAGCTTTCTGTCATCTGCAGGGTGTTGTTCATCGTGATCTCAAGCCAGAGAATTTTCTCTATATTTCTGAGGAAAATTCCACTCTGAAGGTCATTGATTTTGGACTCTCTGACTATGTGAAGCCAGATGAAAGGTTGAATGATATTGTTGGAAGTGCATATTATGTAGCTCCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCTTACATTCTTCTATGTGGAAGCCGACCCTTTTGGGCAAGGACAGAATCTGGCATATTCCGGGCTGTCCTGAAGGCAGATCCAAGTTTTGATGAAGCTCCTTGGCCATCTTTATCAGCTGATGCAGTAGATTTTGTAAAGAGACTGTTGAACAAAGATTATCGGAAAAGGCTAACTGCAGCTCAGGCTCTCAGTCATCCATGGCTGACGAGTCATTGTGATGATGTGAAGATACCTTTTGATATGATAATCCACAAGCTTGTTAAAGCTTATATATGCTCATCTTCTTTACGCAAATCAGCATTAGGGGCTCTTGCAAAGACATTAACATTAGTGCAGCTAGCATATCTGAGAGAACAGTTCAACATGTTAGGGCCAAACAAAAGTGGGTTAATCTCCATGCAGAACTTCAAGACGGGTATTTTGAGGAGTGTCACCGATGCCTCAAAGGATTCAAGGGTCTTAGATTATGTGAACATGGTTAGTTCAATCCAATATCGCAAATTAGATTTTGAGGAATTTTGTGCTGCTGCTATAAGTGTCCATCAGCTAGAGGGCATGGAGAGCTGGGAGCAACATGCAAGGCGTGCCTATGAGTTGTTTGAAAAGGAAGGAAATAGACCAATTATGATTGAAGAGCTTGCCTCGGAACTTGGTCTTAGCCCTTCAGTACCAATTCATGTGGTACTGCAAGATTGGATAAGACACTCAGATGGGAAGCTTAGCTTCTTGGGGTTTGTGAGACTCCTGCATGGCGTTTCTTCTCGCACATTTCAGAAGGCTTGA	1740	0.4621	MGLCHGKPVETSRSEGGHHVFPGEKEVVVAASPKTSTKGSKFPFYSPSPLPSLFKNSPANSSVSSTPLRLFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPEGSECEVGLDKSFGFSNHFHTHYELGPEVGRGHFGYTCSAKGRKGAFKGHDVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHKNLVQFYDAYEDNDNVYIVMELCKGGELLDKILSRGGKYSEEDARTVMIQILSVVAFCHLQGVVHRDLKPENFLYISEENSTLKVIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSADAVDFVKRLLNKDYRKRLTAAQALSHPWLTSHCDDVKIPFDMIIHKLVKAYICSSSLRKSALGALAKTLTLVQLAYLREQFNMLGPNKSGLISMQNFKTGILRSVTDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISVHQLEGMESWEQHARRAYELFEKEGNRPIMIEELASELGLSPSVPIHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRTFQKA	579

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun1g01595	579	ProSiteProfiles	Protein kinase domain profile.	126	387	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun1g01595	579	CDD	STKc_CAMK	125	386	-	-
	Viun1g01595	579	FunFam	CDPK-related kinase 1	119	214	-	-
	Viun1g01595	579	SMART	serkin_6	126	387	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun1g01595	579	PANTHER	SERINE/THREONINE-PROTEIN KINASE	112	555	-	-
	Viun1g01595	579	Pfam	Protein kinase domain	126	387	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun1g01595	579	SUPERFAMILY	EF-hand	417	570	IPR011992	-
	Viun1g01595	579	Gene3D	Transferase(Phosphotransferase) domain 1	213	405	-	-
	Viun1g01595	579	FunFam	Calcium-dependent protein kinase SK5	297	392	-	-
	Viun1g01595	579	ProSitePatterns	Protein kinases ATP-binding region signature.	132	158	IPR017441	GO:0005524
	Viun1g01595	579	Gene3D	-	408	497	-	-
	Viun1g01595	579	FunFam	CDPK-related kinase 1	399	571	-	-
	Viun1g01595	579	MobiDBLite	consensus disorder prediction	1	22	-	-
	Viun1g01595	579	SUPERFAMILY	Protein kinase-like (PK-like)	118	416	IPR011009	-
	Viun1g01595	579	Gene3D	-	413	567	-	-
	Viun1g01595	579	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	250	262	IPR008271	GO:0004672\|GO:0006468
	Viun1g01595	579	Gene3D	Phosphorylase Kinase; domain 1	122	212	-	-
	Viun1g01595	579	FunFam	CDPK-related kinase 3	118	289	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun1g01595	Viun-Chr1	27655026	27660164	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun1g01595	1	577	EF-hand Containing Proteins	AT3G50530	66.299	0.0	840

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Viun1g01595		Pkinase	9e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun1g01595	-		-	gmx:100803625	1083.55