Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01592 ATGCACCACTTCGCCATGGACAACTCTCACCTTCTTCAATTCCTTCCAAACACCACCACCACCACCGCCGCCACCACCACCAACAACAACCCCTTCTTCCACACTGCTCCACACACCACCAACATCATGCACCACCACCAAACCCTCTCCAATAACTCCTCCTCCAATAACTTCTATCCCTTTCATGTCTCCCAAATTACCCCAACACCCTCCCACCATGATAGAGCCCTTGCTGCCATGAAGAACCACAAGGAAGCTGAGAAGAGAAGGAGGGAGCGAATCAACTCCCACCTCGATGAGCTTCGCACTCTTCTCCCTTGCAATTCCAAGACAGACAAGGCTTCGCTTCTGGCGAAGGTTGTGCAGCGAGTGAAGGAGTTGAAGCAGCAGACGTCAGAGATAACGGAGCTGGAGACGGTTCCGTCGGAAACCGACGAGATCACGGTGCTCTCGACCGGCGGGGACTACGGCAGCGATGGGAGGCTGGTGTTCAAGGCCTCGCTGTGCTGCGAGGACCGCTCCGACCTCATCCCGGATCTCATAGAAATCCTGAACTCGCTTCACCTGAAAACCCTCAAAGCAGAAATGGCGACGCTGGGTGGAAGAACACGCAACGTTCTGGTGGTGGCTGCAGACAAAGAACACAGCATCGAATCCATCAATTTCCTTCAGAACTCGCTCAAGTCCTTGCTAGACAGGTCCAATTCCAGCGACAGATCAAAACGTCGCCGTGGCCTAGACCGAAGGCTAATGTCTTAA 759 0.5389 MHHFAMDNSHLLQFLPNTTTTTAATTTNNNPFFHTAPHTTNIMHHHQTLSNNSSSNNFYPFHVSQITPTPSHHDRALAAMKNHKEAEKRRRERINSHLDELRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELETVPSETDEITVLSTGGDYGSDGRLVFKASLCCEDRSDLIPDLIEILNSLHLKTLKAEMATLGGRTRNVLVVAADKEHSIESINFLQNSLKSLLDRSNSSDRSKRRRGLDRRLMS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01592 252 CDD bHLH_AtAIG1_like 74 149 - -
Viun1g01592 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 127 IPR011598 GO:0046983
Viun1g01592 252 Gene3D - 73 139 IPR036638 GO:0046983
Viun1g01592 252 Coils Coil 84 104 - -
Viun1g01592 252 MobiDBLite consensus disorder prediction 234 252 - -
Viun1g01592 252 FunFam transcription factor bHLH30 73 136 - -
Viun1g01592 252 SMART finulus 84 133 IPR011598 GO:0046983
Viun1g01592 252 MobiDBLite consensus disorder prediction 233 252 - -
Viun1g01592 252 Pfam Helix-loop-helix DNA-binding domain 82 127 IPR011598 GO:0046983
Viun1g01592 252 PANTHER TRANSCRIPTION FACTOR BHLH30 39 246 IPR045847 GO:0003700|GO:0006355
Viun1g01592 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 135 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01592 Viun-Chr1 27610816 27612632 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01592 58 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 68.306 5.92e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun1g01592 HLH 4.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01592 - K22484 gmx:100802566 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01592 1 27610816 27612632 Viun1g01592 1 27610816 27612632 ECH