Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01587 ATGTTATCTCATTCATTTACTATGATTGCAACAATAATTATTGTTCTTGCACAAACACTTGTGGGGGTGACTTCACTTCCTGAAGCTGATAAAATTAGCACTTTGCCAGGGCAGCCACATGTTAAGTTTCAGCAATATTCTGGTTACATTACAGTGGATGACCAACATCAGAGAGCTTTGTTTTATTACTTTGTTGAAGCTCAAAAACACCCTACTTCCAAGCCAGTAGTCCTCTGGTTGAATGGAGGTCCTGGTTGTTCATCTGTTGGGGTTGGAGCTCTAATTGAGAATGGCCCTTTCAGACCAAGAGACAATAATGTTCTTGAAAAGAATCATTATAGTTGGAACATAGTGGCAAATGTGCTATACTTGGAATCACCGGCTGGTGTTGGATTTTCCTACTCTAGCAATAAATCTTTCTATACCTTGGTGACAGATGAAATTACAGCTAGGGATAATCTTGTTTTCCTACAACGCTGGTTCATTGAATTCCCTGAGTACTCAAACAACGCTTTTTTCATTACAGGGGAGAGCTATGCTGGTCACTATGCTCCACAACTTGCACAACTTATTGTTCAAACCAAGAGCAAAATCAATCTCAAGGGAATAGCAATTGGGAATCCTCTCATGGAATTTGACACTGATTTGAACTCCAAAGCTGAATTCTTTTGGTCCCACGGACTGATCTCAGATTCAACTTATGATCTCTTCACCAAAGTCTGCAACTACTCCACCATTAGGAGACAAATGATAAGTGGGAATCTTAGTGAGATTTGTGAAAACATAGATACATTGGTGTTTACTGAGGTTAGCAACTATATAGACCAATATGATGTCACTCTTGATGTGTGTTTGTCATCAGTGAATGGACAGGCCTATGTGCTGAATCAAATGCAAAAGATACAGAAGATAGATGTTTGTGTGGATGATAAAGCAGTGAACTACTTAAACAGGAAAGATGTGCAGGAGGCTCTTCATGCTAAGCTTGTTGGAGTATCCAAATGGTCAATTTGCAGCAAGGTTCTCCACTATGACCGTACAAATCTAGAGATACCAACAATTTCTATTTTAGGATCACTGGTTAATTCCAAAATCAGGGTTCTGGTGTATAGTGGAGATCAAGATTCAGTTATTCCATTAATGGGATCTCGATCTTTGGTGAATGGATTGGCCAAGGAACTTGGACTGAATACAACAGGGGCCTACAGAGCCTGGTTTGAAGGAAAACAGGTAGGAGGATGGACACAAGTGTACGGAGATATCTTATCTTATGCTACCATAAGAGGAGCATCTCATGAAGCTCCTTTTAGTCAACCAAAAAGATCACTGCAGCTACTTAAAGCATTTCTTGAAGGAAAGCCCCTTCCTGCTGTTAAATAA 1380 0.3986 MLSHSFTMIATIIIVLAQTLVGVTSLPEADKISTLPGQPHVKFQQYSGYITVDDQHQRALFYYFVEAQKHPTSKPVVLWLNGGPGCSSVGVGALIENGPFRPRDNNVLEKNHYSWNIVANVLYLESPAGVGFSYSSNKSFYTLVTDEITARDNLVFLQRWFIEFPEYSNNAFFITGESYAGHYAPQLAQLIVQTKSKINLKGIAIGNPLMEFDTDLNSKAEFFWSHGLISDSTYDLFTKVCNYSTIRRQMISGNLSEICENIDTLVFTEVSNYIDQYDVTLDVCLSSVNGQAYVLNQMQKIQKIDVCVDDKAVNYLNRKDVQEALHAKLVGVSKWSICSKVLHYDRTNLEIPTISILGSLVNSKIRVLVYSGDQDSVIPLMGSRSLVNGLAKELGLNTTGAYRAWFEGKQVGGWTQVYGDILSYATIRGASHEAPFSQPKRSLQLLKAFLEGKPLPAVK 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01587 459 Gene3D - 354 452 - -
Viun1g01587 459 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Viun1g01587 459 FunFam Carboxypeptidase 353 452 - -
Viun1g01587 459 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 439 IPR001563 GO:0004185|GO:0006508
Viun1g01587 459 SUPERFAMILY alpha/beta-Hydrolases 34 456 IPR029058 -
Viun1g01587 459 Pfam Serine carboxypeptidase 37 452 IPR001563 GO:0004185|GO:0006508
Viun1g01587 459 Gene3D alpha/beta hydrolase 27 285 IPR029058 -
Viun1g01587 459 FunFam Carboxypeptidase 25 456 - -
Viun1g01587 459 Gene3D - 307 344 - -
Viun1g01587 459 ProSitePatterns Serine carboxypeptidases, histidine active site. 422 439 IPR033124 GO:0004185
Viun1g01587 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Viun1g01587 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Viun1g01587 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Viun1g01587 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 422 435 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01587 Viun-Chr1 27518564 27521133 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01587 312 455 Calmodulin-binding Proteins AT2G22960 29.252 1.25e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01587 K16297 - gmx:100793889 820.461