Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01585 ATGCTACCTCAGTCATTTACTATGATTGCAACAATATTTTTTGTTCTTGCACAAACAATTGTGGGAGTGAGTTCACTTCCCGAATCTGATAAAATAAGCAATTTGCCGGGGCAGCCTCAGGTCAAATTTCAGCAATTTTCTGGCCACATTACTGTGGATGATCAGAATCAGAGAGCTTTGTTTTACTACTTTACTGAAGCAGAAGAAGACCCTGCTTCCAAGCCATTAGTCCTGTGGTTGAATGGAGGGCCTGGTTGTTCATCGATTGGAGTTGGAGCTTTCGGTGAGCATGGCCCTTTCAGACCGAGTGACAACAATGTTCTTGAGAAAAATGATTATAGTTGGAACAAAGCTAGGGATAATCTTGTGTTCTTACAACGTTGGTTCTCTAAATTTCCTGAGTACTCAAATAACGACTTCTTCATTACTGGGGAGAGCTATGGAGGTCACTATGTTCCACAACTTGCACAGCTTATTGTTCAAACCAAGACCAACTTCAATCTCAAGGGGATAGCAATAGGGAATCCTCTTCTGGAGTTCAATTCTGATTTCAACGCCAGATCTGAGTATTTTTGGGCTCACGGGCTTATATCAGATTCAACATTGGAAATCCTAACCACAGTCTGCAACTATTCCTCGATTAGGAGACAGCTTCAAAATGGGAATCTTGAAGTGGTTTGTGCAAAAGCAAACAAGCAATTGTATGATGAGGTTAGCGACTATGTAGATGAGTATGATGTTACTCTTGATGTTTGTTTGTCATCAGTAAATCAACAGGCTTATGTGCTGAATCAACTGCAAGAGACACAAAAGATAGATGTTTGTGTTGGTGATAAAACGACCACATACTTGAACAGGAAAGAAGTCCAAGAAGCTCTACATGCTAAACTTGTAGGAGTCACCAAATGGTCAACTTGCAGTTCAGTTCTGCATTATGACTACAGGAATCTAGAAATACCAACAATTCCTATCCTAGGGTCACTTGCCAAGTCTGGCATCAGGGTCCTGGTATACAGTGGTGATCAAGACTCAGTGATTCCATTAACAAGTTCTAGATATCTAGTGAATGGATTGGCCAAGGAAATTGGACTTGAGACCACAGTGGCCTATAGAGCCTGGTTTGAGGAAAAACAGGTAGCAGGATGGACACAAACATATGGGAACATCTTATCATATGCCACCATAAGAGGAGCATCTCATGAAGCTCCCTTTACTCAACCTCAAAGATCACTACTGCTACTCAAGACATTTCTACAAGGAAAGCAACTACCCAGTGTTAAATGA 1284 0.412 MLPQSFTMIATIFFVLAQTIVGVSSLPESDKISNLPGQPQVKFQQFSGHITVDDQNQRALFYYFTEAEEDPASKPLVLWLNGGPGCSSIGVGAFGEHGPFRPSDNNVLEKNDYSWNKARDNLVFLQRWFSKFPEYSNNDFFITGESYGGHYVPQLAQLIVQTKTNFNLKGIAIGNPLLEFNSDFNARSEYFWAHGLISDSTLEILTTVCNYSSIRRQLQNGNLEVVCAKANKQLYDEVSDYVDEYDVTLDVCLSSVNQQAYVLNQLQETQKIDVCVGDKTTTYLNRKEVQEALHAKLVGVTKWSTCSSVLHYDYRNLEIPTIPILGSLAKSGIRVLVYSGDQDSVIPLTSSRYLVNGLAKEIGLETTVAYRAWFEEKQVAGWTQTYGNILSYATIRGASHEAPFTQPQRSLLLLKTFLQGKQLPSVK 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01585 427 FunFam Carboxypeptidase 321 420 - -
Viun1g01585 427 ProSitePatterns Serine carboxypeptidases, histidine active site. 390 407 IPR033124 GO:0004185
Viun1g01585 427 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Viun1g01585 427 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 153 IPR001563 GO:0004185|GO:0006508
Viun1g01585 427 PRINTS Carboxypeptidase C serine protease (S10) family signature 390 403 IPR001563 GO:0004185|GO:0006508
Viun1g01585 427 Gene3D alpha/beta hydrolase 121 423 IPR029058 -
Viun1g01585 427 Pfam Serine carboxypeptidase 118 420 IPR001563 GO:0004185|GO:0006508
Viun1g01585 427 SUPERFAMILY alpha/beta-Hydrolases 33 423 IPR029058 -
Viun1g01585 427 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 124 IPR001563 GO:0004185|GO:0006508
Viun1g01585 427 FunFam Uncharacterized protein 28 120 - -
Viun1g01585 427 ProSitePatterns Serine carboxypeptidases, serine active site. 142 149 IPR018202 GO:0004185
Viun1g01585 427 Gene3D alpha/beta hydrolase 27 120 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01585 Viun-Chr1 27513939 27516558 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01585 283 423 Calmodulin-binding Proteins AT2G22960 32.624 8.77e-20 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01585 K16297 - gmx:100799900 747.273