Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01580 ATGCAAAGTCCAAGAAGCCAAAAAGAAAACATCATGGATTCGGGAGACGACGAGACAGGTTCAGCCTCCTCATCGTCAGGCAAATTCCTGCTCGGCTTTATCGAGGCCAACATCGTCGGCGTGCAGCACCATCATGGCACCATCCGCGGCCGCGCCGTCGTCGTCCTCGACCGTGAGCCCGACAACATTCACGACGCCAACGCCATCAAAGTCAGCAACATCCACGGCGACCCCGTCGGCTACATTGAACGCGCCGTCGCAGCCGTCCTCACCCCTCTCATCGACGACGAACTTATCACCGTCGCAGCCATCGTACCCGACGCCCGCAAAACCTACCGAATCCTCTGCCAAATCCACATCTTCGCTCGCCTCCAAGACTTTGACGTCGTCAAATGTGCCGTTTCCCGTGGCCCCTGCAGATTCATCACCGAATCCGAGGCCGCCTTCACCCTCTCTGACTCCGCCGCCGTTAAGGCTACCAAGGCGCAGAAAAGGTTCATGACCGTCGACGCCATTTTCAACCTCGTGAACAGCAACCTTGCCGATAAGAACCGCGCCATCGATATCTTGGAGCCTCCCAAGAGCATCATCAGAGCCGAGCTTCTCCCTCACCAGAAGGAGGGTCTCGCGTGGCTCGTTCGTAGAGAAAACACCGATGACTTGCCACCCTTCTGGGAAGAAAACCATAGCAAGTTCGTAAATATTTTAACCGATTATCAGACCGATAAAAGGCCTGACCCTTTGAGAGGTGGTATCGTCGCCGATGAGATGGGGTTGGGAAAAACCTTAATTATGCTTTCTCTGATTGCTTTTGATAAAAGCCAAATGGGTGTCTCTAGGAATGGGAGAACTGACAGGAAGTGGGTTTCTGTAGGGAAGCGACGCAGGAATGAAGTTGAGGGCTCCCATGGAACCGGAGTGAGAACAAATGGAACGTTAGTGGTGTGTCCTCCTTCTGTTATGTCGGCATGGATAACGCAATTGGAGGATCACACTGTGCATGGTGGACTGAAGACTTACATGTATTACGGAGAAAAAAGGACAAAGGACATTGAAGAACTCAAGAAGTATGATTTGGTGTTGACTACTTACACGACTTTGTCGAATGAACCGGACGAGATGCCCGCGAAACAGATGGAGTGGCGGAGAATTATATTGGACGAAGCACACACAATCAAGAATTTCACTGCCAACCAAAGTAAGACGGTTTTCGGATTGCAAGGTCAGTACAGATGGGCAGTCACAGGAACACCAATTCAAAGTGGTTGCATTGATTTGTACTCTTTCATGGTCTTTTTGCGCTTTCAGCCGTTTTCGGAGCGAAGGTATTGGAATTTGTTGGTGCAACGCCCTCTTGCTCAGTGCTTAGAAACCGGGCTCACACGGTTGCAGGTGTTGATGGAAGCAATTGCTTTGCGAAGAACAAAAGATATGGCATTGGTGTGTCTGCCACCTAAAACCGTTGAGATTTGTTATGTTGAACTTTCTGTGGAAGAACGCCAGTTGTATGATCGGGAGAAAGAGAAAACAAAGGCATTGTTGAGAAGAAGTTATATACGTGTGAACAGTCCACTTTCCGAGTACAGCGAGGTGCTAAATAGTATTCTAATACTTCGCCAAATCTGTGCTGACTCGAAATTGTGTAAATTTCAGTCACATAGCAGCATTACAGATAGTGAAGGCGAAGCAATTGTTTCTTATAATCCTGAATTGCTGCAAACATTACTTGGCCAGCTGGAAGAAGGTGAAGATTTTGAATGTCCAATCTGTTTATCTCCTCCAACAGACATTGTCATCACACGCTGTGCTCACATTTTCTGCCGTCAGTGTATCCTGAGATCTCTAGAAAAGAAGAACTCTGGTGATTGTCCTCTTTGCCGGCGAAAACTCTCATCAGAATCTGATATATTCTCACCTCCTCCCAAGCCAGAGACAGACAGTGCTGAACTGAGTTCAGCATCAGACAAACCACTATCGTCCAAGGTTTCGACTCTCATAAGATTTCTTAATGAATCAAGGGACAAAAATCCAACGGTAAAGTCAGTTGTATTTTCACAATTTCGAAAGTTGTTGCTTTTACTTGAAGAGCCTCTGAATGCGGCGGGTTTCAAGACTATGCGTCTTGACGGGACAATGAATGCTAAACACAGAACCAATGTTATTGAACAGTTTCAAGCTCGAAGAAGTGATGGTTATCCAACTGTTCTGCTTGCAAGCTTAAGAGCTTCAAGTGCAGGTATAAATCTGACAGCTGCATCTAGACTCTACTTTATGGAACCATGGTGGAACCATGCAGTTGAGGAACAAGCAATGGACCGTGTCCACCGCATTGGACAGGACCAGCCGGTGAAGATCGTTCGATTCATTGCTCAAAACAGCATTGAGGAGAAAATGTTGGTGTTGCAGGAAAGGAGGAAACAACTGTCCACGGAAGAACCATCTGAGAGGGTAAGAAAGGGCATCGGCATTCTAGATATGAAATTCCTTCTAGATTCCTAG 2499 0.4746 MQSPRSQKENIMDSGDDETGSASSSSGKFLLGFIEANIVGVQHHHGTIRGRAVVVLDREPDNIHDANAIKVSNIHGDPVGYIERAVAAVLTPLIDDELITVAAIVPDARKTYRILCQIHIFARLQDFDVVKCAVSRGPCRFITESEAAFTLSDSAAVKATKAQKRFMTVDAIFNLVNSNLADKNRAIDILEPPKSIIRAELLPHQKEGLAWLVRRENTDDLPPFWEENHSKFVNILTDYQTDKRPDPLRGGIVADEMGLGKTLIMLSLIAFDKSQMGVSRNGRTDRKWVSVGKRRRNEVEGSHGTGVRTNGTLVVCPPSVMSAWITQLEDHTVHGGLKTYMYYGEKRTKDIEELKKYDLVLTTYTTLSNEPDEMPAKQMEWRRIILDEAHTIKNFTANQSKTVFGLQGQYRWAVTGTPIQSGCIDLYSFMVFLRFQPFSERRYWNLLVQRPLAQCLETGLTRLQVLMEAIALRRTKDMALVCLPPKTVEICYVELSVEERQLYDREKEKTKALLRRSYIRVNSPLSEYSEVLNSILILRQICADSKLCKFQSHSSITDSEGEAIVSYNPELLQTLLGQLEEGEDFECPICLSPPTDIVITRCAHIFCRQCILRSLEKKNSGDCPLCRRKLSSESDIFSPPPKPETDSAELSSASDKPLSSKVSTLIRFLNESRDKNPTVKSVVFSQFRKLLLLLEEPLNAAGFKTMRLDGTMNAKHRTNVIEQFQARRSDGYPTVLLASLRASSAGINLTAASRLYFMEPWWNHAVEEQAMDRVHRIGQDQPVKIVRFIAQNSIEEKMLVLQERRKQLSTEEPSERVRKGIGILDMKFLLDS 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01580 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 810 IPR027417 -
Viun1g01580 832 SMART ring_2 587 626 IPR001841 -
Viun1g01580 832 ProSiteProfiles Zinc finger RING-type profile. 587 627 IPR001841 -
Viun1g01580 832 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 661 825 IPR001650 -
Viun1g01580 832 Pfam HIRAN domain 31 118 IPR014905 GO:0003676|GO:0008270|GO:0016818
Viun1g01580 832 ProSitePatterns Zinc finger RING-type signature. 602 611 IPR017907 -
Viun1g01580 832 SMART HIRAN_2 31 124 IPR014905 GO:0003676|GO:0008270|GO:0016818
Viun1g01580 832 MobiDBLite consensus disorder prediction 633 655 - -
Viun1g01580 832 CDD SF2_C_SNF 658 789 - -
Viun1g01580 832 SUPERFAMILY RING/U-box 570 635 - -
Viun1g01580 832 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 242 436 IPR014001 -
Viun1g01580 832 Pfam SNF2-related domain 204 546 IPR000330 GO:0005524|GO:0140658
Viun1g01580 832 Gene3D - 22 140 - -
Viun1g01580 832 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 178 811 - -
Viun1g01580 832 Gene3D - 484 819 IPR027417 -
Viun1g01580 832 Pfam Helicase conserved C-terminal domain 661 778 IPR001650 -
Viun1g01580 832 Pfam Zinc finger, C3HC4 type (RING finger) 584 631 - -
Viun1g01580 832 Coils Coil 791 811 - -
Viun1g01580 832 Gene3D - 236 475 IPR038718 -
Viun1g01580 832 MobiDBLite consensus disorder prediction 1 23 - -
Viun1g01580 832 SMART helicmild6 692 778 IPR001650 -
Viun1g01580 832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 654 IPR013083 -
Viun1g01580 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 474 IPR027417 -
Viun1g01580 832 SMART ultradead3 197 444 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01580 Viun-Chr1 27455048 27459197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01580 26 819 RAD5 or RAD16-like Gene Family AT5G05130 52.689 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun1g01580 SNF2_N 3.9e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01580 K15711 - gmx:100791783 1022.69