Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01579 ATGAAGTCTTGGTCAGTGGATGAGTGGAGGGAGTACTTTGTGTCTGCGAATTCGGATATTTTTGAGATAATTGAAAACGCGATTGTCGTGGCGGCTACGGATTGTCCGAAGGAGTTTAGAGTGAAGAGGGATGCGATTGCAGAGAGGCTGTTCTGTTCCAGGTTGACTCGCTGTGCGGGTTGTGACCGTGTGGAGTTGGTTGCGAGGGGAGTTGGTAAAGAGAGTGATGATGAAGGCTGCAAGAATGGGGTAGAAAGAAATGGGGCTGAGTTCGCTGGAGCAAGCAAAGAGAGCAAGGTCAATGAAGGTGGAGATGAGGATGCAGAGATTGATGTCAATGGTGTTAGCAACTATAGTTTTGGTGAGGCCGAGGCATTAACTGATGAGATGGATGAAGAGACTCAGTATATGGGGGAGATTTTGAGGATCAAAGACGTTCTGCTGAACCGTGAAGAAGAGTCTGATTCTGTCTTATTTGAATCGTTGAGGAGGCTTCAGCTGATGGAGCTAACCGTGGATTCTCTTAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTCCGAAAACGGGGATCAAAGGAAATTCGTGAACTTGCAAAGAAACTTATCGATGGCTGGAAAGATATGGTTGATGAGTGGGTGAAGGCCACTGCTACAACAGCTATTGCAGCTTCAGATGAAGGCACACCCGATTCAGTTAATCCATCTGTTGTTGATGATGAAGAAGAAGAAGGACTTCCATCACCTCCTATGGATGAAGGGGCCTTCTTTGTTGCTCCAACTGGTTCCATGGAACTTTCACAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACCAAGTGGTCCATCCCACAAGAACCGTGACAACAATGGCAGAAGGCCAGCCATTCCTAATAGGGAGGATAAGAGTCAACTGGCAAAGAGAAATATGGCTGTTGTGCCAGTGAGGCCAAATAAGCCAGTAACCTCTGATTCTGGCCCTGGCAGACCCCTCCCATCTAATAATCTGCAGAGAAAAAGCAATGTGGAGCCAAAAATGCAGCAAAAGATAGAGAACAATTCACTGGCAAGGAGGCCTCCCATTGGTCATCTAGATAAACCCATGCGTTCAGATGAAGCGGCTGTCCAAGTAAAGCTAGAAGCCACCAAGAGGAAACTTCAGGAGAGGTATCAACAACTTGAAACTGCCAAGAGACAGAGAACAATCCAATTTATGGAAATAAACGATCTCCCGAAGCATGTTAACTACAGAAATCCACATGCAAAGCCTGGTTTTCACAATAGGAACCGGGCCAATACTCGAAGGTAG 1314 0.4642 MKSWSVDEWREYFVSANSDIFEIIENAIVVAATDCPKEFRVKRDAIAERLFCSRLTRCAGCDRVELVARGVGKESDDEGCKNGVERNGAEFAGASKESKVNEGGDEDAEIDVNGVSNYSFGEAEALTDEMDEETQYMGEILRIKDVLLNREEESDSVLFESLRRLQLMELTVDSLKATEIGKAVNPLRKRGSKEIRELAKKLIDGWKDMVDEWVKATATTAIAASDEGTPDSVNPSVVDDEEEEGLPSPPMDEGAFFVAPTGSMELSQFFDGMDDDGNPRPSGPSHKNRDNNGRRPAIPNREDKSQLAKRNMAVVPVRPNKPVTSDSGPGRPLPSNNLQRKSNVEPKMQQKIENNSLARRPPIGHLDKPMRSDEAAVQVKLEATKRKLQERYQQLETAKRQRTIQFMEINDLPKHVNYRNPHAKPGFHNRNRANTRR 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01579 437 Coils Coil 378 405 - -
Viun1g01579 437 SMART TFS2_5 137 212 IPR003617 GO:0005634
Viun1g01579 437 Pfam TFIIS helical bundle-like domain 162 210 IPR017923 -
Viun1g01579 437 CDD TFIIS_I 139 211 - -
Viun1g01579 437 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 424 IPR044805 -
Viun1g01579 437 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 223 IPR035441 -
Viun1g01579 437 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 135 217 IPR035441 -
Viun1g01579 437 ProSiteProfiles TFIIS N-terminal domain profile. 138 213 IPR017923 -
Viun1g01579 437 MobiDBLite consensus disorder prediction 329 356 - -
Viun1g01579 437 MobiDBLite consensus disorder prediction 280 308 - -
Viun1g01579 437 MobiDBLite consensus disorder prediction 415 437 - -
Viun1g01579 437 MobiDBLite consensus disorder prediction 222 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01579 Viun-Chr1 27401021 27404664 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Viun1g01579 Med26 8.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01579 - - gmx:100799367 629.017