Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01569 ATGGCGTCAAGAGCAATAGTTCAACAACAAGCAGCCAGAGGTGAAGCAGTAATCGGGGGAGGAAAACAGCAGAAGAAGAACGGTGTAGCGGATGGAAAGAATCGCAAGGCGTTGGGTGATATTGGGAATCTGGCCAATGTAAGAGGAGTCGTTGAAGTCAAGCCTCATCGCCCCATCACTAGGAGTTTTGGTGCCCAGCTACTTGCCAATGCACAAGCCGCAGCAGTTGTCGAGAATAACAAGAGACAAGCCTGCGCTAATGTGGCTGGTCCTGCTCCTATTGCTGTGACCAAGAAAGTCCCCAAGCCGGTTCAGAAGAAAGTTACTGTAAAACCAAAGCCTGAGGAAGTCATTGTCATTGATGAAGATAGTATAGACAAGGAGGTTCAGAAAGACAAGAAAAAGGAAGGAGATTGCAAGTCCAAGAAGAATTCACAAGCTTTTACATCAGTTCTCACGGCTAGAAGCAAGGCAGCATGTGGCATAACCAACAAACCAAAGGAGAACATTATAGACATCGATGCCAGTGATGTTGACAATGAACTTGCTGCTGTGGAGTACATTGATGACATTTACAAGTTCTACAAACTTGTTGAGCACGAAAGCCGCCCCCATGATTACATACACTTACAACCTGAGATAAATGAGAAGATGAGAGCTATTCTGGTTGATTGGCTGATTGATGTCCACAGCAAGTTTGAACTTTCGCCCGAGACCCTTTACCTGACCATCAATATTATCGATCGGTTCCTAGCAGTTAAGACTGTTCCAAGGAGGGAGCTGCAATTGGTAGGCATCAGTGCCATGCTCATGGCATCCAAGTATGAAGAAATCTGGCCACCAGAGGTTAATGACTTTGTCCACCTCTCAGACAGGGCTTACACTCATGAACAGATACTTGTTATGGAGAAACTTATACTGGGAAAGTTGGAATGGACTTTGACTGTTCCCACACCCTTTGTTTTTCTGGTGCGTTTTATCAAGGCATCAGTCCCAGATCAGGAGTTGGAAAACATGACCCATTTTCTGTCTGAGTTGGGAATGATGAATTACGCGACCTTAATGTATTGCCCATCAATGCTTGCTGCCTCAGCAGTGTTTGCAGCTAGATGCACTCTGAATAAGACTCCCTTTTGGAATGAGACACTTAAGTTGCACACTGGTTACTCACAAGAACAACTTATGGATTGTGCTAAACTATTGACGAGCTTGCACTCCTGTGCTGGAAATGAAAAGCTCAAGGTTGTGTACAGAAAGTATTCTGATCCTCTGAAGGGAGCTGTTGCTGTGCTCCCACCAGCTAGATATCTTCTGCCTGAAGGTTCTGCCTCCCAATAA 1338 0.4522 MASRAIVQQQAARGEAVIGGGKQQKKNGVADGKNRKALGDIGNLANVRGVVEVKPHRPITRSFGAQLLANAQAAAVVENNKRQACANVAGPAPIAVTKKVPKPVQKKVTVKPKPEEVIVIDEDSIDKEVQKDKKKEGDCKSKKNSQAFTSVLTARSKAACGITNKPKENIIDIDASDVDNELAAVEYIDDIYKFYKLVEHESRPHDYIHLQPEINEKMRAILVDWLIDVHSKFELSPETLYLTINIIDRFLAVKTVPRRELQLVGISAMLMASKYEEIWPPEVNDFVHLSDRAYTHEQILVMEKLILGKLEWTLTVPTPFVFLVRFIKASVPDQELENMTHFLSELGMMNYATLMYCPSMLAASAVFAARCTLNKTPFWNETLKLHTGYSQEQLMDCAKLLTSLHSCAGNEKLKVVYRKYSDPLKGAVAVLPPARYLLPEGSASQ 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01569 445 SMART Cyclin_C_2 317 434 IPR004367 -
Viun1g01569 445 Pfam Cyclin, N-terminal domain 190 314 IPR006671 -
Viun1g01569 445 PANTHER CYCLINS 141 422 IPR039361 -
Viun1g01569 445 SUPERFAMILY Cyclin-like 179 314 IPR036915 -
Viun1g01569 445 CDD CYCLIN_AtCycB-like_rpt1 167 312 - -
Viun1g01569 445 ProSitePatterns Cyclins signature. 219 250 IPR006671 -
Viun1g01569 445 Pfam Cyclin, C-terminal domain 317 433 IPR004367 -
Viun1g01569 445 Gene3D - 204 315 - -
Viun1g01569 445 MobiDBLite consensus disorder prediction 1 36 - -
Viun1g01569 445 SMART cyclin_7 321 403 IPR013763 -
Viun1g01569 445 SMART cyclin_7 224 308 IPR013763 -
Viun1g01569 445 FunFam G2/mitotic-specific cyclin 203 311 - -
Viun1g01569 445 SUPERFAMILY Cyclin-like 316 435 IPR036915 -
Viun1g01569 445 PIRSF Cyclin_A_B_D_E 1 445 IPR046965 GO:0016538|GO:0044772
Viun1g01569 445 FunFam G2/mitotic-specific cyclin-1 312 429 - -
Viun1g01569 445 Gene3D - 190 429 - -
Viun1g01569 445 CDD CYCLIN_AtCycB-like_rpt2 317 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01569 Viun-Chr1 27323115 27325911 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01569 1 438 Core Cell Cycle Gene Families AT4G37490 53.333 1.34e-149 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01569 K21777 - gmx:547919 704.131