Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01568 ATGCCTTCGAGCTCGAATTCGAAGCAGAAAAAGAAGCAATCGAAGGCGCAAAACTCACCATTGTCGTCGAATGCCACCACCACGCCTTCCAAAACGCCGCATCAACAAGGGCAAGAGCATGCCTCTTTATGCGAAGAAGCTTCTAGAAAGTTCCCTTCTCTCATCGCCAAATCCGCGTTTGTCGCCGAAATCATCCATGTCGACGACACTGTTCCCCTCTTCAAGGGTTTCAGAATTTGGCTCTCCGAACCTTCCATGCTCTCCTCCTCTCTCTCTCCGGGTTCTATTGTCTCGGTGTCTATTCCATCTTCAGACGAGAAAAGTTCACAATTGCATAGTTTTCCCCTCTTGTCATTAGCTAATGAGTGTGCCAAATGCCATGGACTGGAACTTGGGAAGGCAGTTGATGATGATGTTGCGGGGAACTACTTTGTGCTTGCAACGGTGTTTCCTGCTAGTAAGGTTTTGAAGAATGGAGTACGCCTGTCTTCAAACCTTTATTATACCATGGGATGTCCTCCTATGGGCACAAGTGTGTTTGTTTGTGCATTACAGAAACAACTCTTGCCTACTCCTGCCAGTGGGAGCAATCAACAGCATTATATGGAAAATAATTGTCTACCTATTAGTAATTGCAAGGAATTGTATCTTCAGTTGGTTCCTTCTAAAAGTGGACTTCCGAAGTTTAATAACTTTCCCTCATTGGACGTGTCTAAGGTGAAATCTCATGTCCAATTTGAGAATGACATTGTTGCTTCTCCTGCAACGCCTTCTTATGTATCAAAGTTTTCTAATGCTAGTGGTTTGTCTTCTCCACAATTTGACGATTCAGCATCTAGTGTGCCAAATCAGAAGAGTCAATCACTGATTTCATCTGATGTCATCTTAGCATTAAGTGATGAAAGTTCTAAACAGCCACTTGAGACATGGGCAACTTCATGGTTATACTCTCGATCTTTACTTCTGGGGAATCTTGTCAGATTTCCGATGTTTTCAGAGTGCTTTTTCCAGGTGATAGGAGCTAAGAAGCAGCGAGTTGCCAAATCTGGTCATTATCCATCAAATGGAAGCAGTGATTTCTACCCCGAGGATTCTGATGTAGCAGATAGTGTAAATCAGGCTTTCACTGTTAATTATGAAACAAAGGTATTTTTATCTCTGCCGTCAAATGCAGCATCTGAAGAGCCAATTCAAAAGGATATACCTTGTGTAAAACAAGAATACAAAGTTGCTAATGCTAGCTTACCAGATAAAATCTCTAAATTAGGTGGTCTATCCAAAGAGTATACACTTCTAAAGGACATAATTTCTTCGTCGGTGAATGATGCTTTATCAAGCTTTGGTCTAAGAACTACAAGAGGTGTCCTTCTTCATGGTCCAACCGGTACAGGAAAGACTTCCCTGGCTCAATTATGTACTCATGATGTTGGAGTCAAATTTTTCCCAATAAATGGACCTGAAATTGTTACCCAATATTATGGGGAAAGTGAGCAAGCTTTGCATAAAGTTTTTGATTCTGCCATTGAAGCTGCACCTGCTGTGGTATTCATTGATGAATTAGATGCAATTGCTCCTGCAAGGAAAGAAGGAGGTGAAGAGCTATCTCAAAGATTGGTTGCGACTTTATTGAATATGATGGATGGAATTAGTAGAACTGAAGGGTTACTTGTAATTGGTGCCACTAACCGCCCTGACCATATTGAGCCAGCTCTCAGACGACCTGGAAGATTTGACAAGGAAATTGAAATTAGTGTGCCATCCCCCAAACAACGTTCAGATATTTTGTTCACTCTTCTCAATGAAATGGATCATTGTCTCTCTGAGTTAAATATTGAACAGCTTGCTGCAGTCACTCATGGTTTTGTGGGTGCTGATCTAGCTGCACTTTGCAATGAAGCAGCCTTGATTTGTCTACGGCGTTATGCTTGCTTTAAGAAGACTAATGATTCTAGTTCTGATCATATAGCCGAGAAGTCTGTTCTGATGAATGGTGCAACAAACTCAATAGATCATTTGGATGAGGCAACTTCATCTACTTCAGATATGTGGGCCACCAGAAGGACTTACGAAACTATGGATTTAATTCATAGTGGCAAAGAAGATCAGATTTTGAAAGTAAGCTTTGAAGATTTTCAGGAGGCCAGGATGAAAATAAGACCTAGTGCCATGAGAGAGGTAATTCTTGAGGTTCCAAAGGTTAATTGGGAAGATGTTGGCGGTCAAAAGGAGGTCAAAGCTCAATTGATGGAAGCAGTTGAATGGCCACAGAAACATCATGATGCATTCGACCGTATCGGAACTCGCCCTCCTACTGGTGTATTGATGTTTGGACCTCCAGGTTGTAGTAAAACTCTCATGGCACGTGCAGTTGCTTCTGAAGCAGGGTTGAACTTTCTAGCCGTCAAGGGTCCTGAACTCTTTAGCAAATGGGTTGGTGAATCTGAGAAGGCCGTCAGAACATTATTTGCAAAAGCAAGGGCCAATGCCCCATCAATAGTATTTTTTGATGAAATAGACAGTCTTGCTGTAACTCGTGGGAAGGAAAGTGATGGAGTTTCAGTCTCAGATAGGGTCATGAGTCAACTTCTTGTTGAGTTAGATGGTCTACATCAAAGAGTTAATGTCACTGTCATAGCTGCTACAAATAGGCCAGACAAGATTGACCCTGCCCTTTTAAGGCCAGGACGCTTTGACCGTCTGCTATATGTTGGACCTCCAAATGAGGTGGATAGGGAAGAGATATTTCGCATTCATCTACGTAAAAGCCCATGCGGTTCTGATGTTAGCCTTAGAGAACTAGCTCTACTCACCGATGGTTGTACTGGGGCTGACATATCATTTATATGTCGGGAGGCAGCTGTTGCAGCAATTGAGGAGAGCGTTGATGGTTCAGTTATATCAATGGAGCATTTAAATATGGCAATCAAACAGATCCAGCCATCAGATGTTCACTCCTACCAAAAGCTGTCAACAAAATTTCAAAGGGCCGTCACTCCAGTGATATAA 3006 0.4228 MPSSSNSKQKKKQSKAQNSPLSSNATTTPSKTPHQQGQEHASLCEEASRKFPSLIAKSAFVAEIIHVDDTVPLFKGFRIWLSEPSMLSSSLSPGSIVSVSIPSSDEKSSQLHSFPLLSLANECAKCHGLELGKAVDDDVAGNYFVLATVFPASKVLKNGVRLSSNLYYTMGCPPMGTSVFVCALQKQLLPTPASGSNQQHYMENNCLPISNCKELYLQLVPSKSGLPKFNNFPSLDVSKVKSHVQFENDIVASPATPSYVSKFSNASGLSSPQFDDSASSVPNQKSQSLISSDVILALSDESSKQPLETWATSWLYSRSLLLGNLVRFPMFSECFFQVIGAKKQRVAKSGHYPSNGSSDFYPEDSDVADSVNQAFTVNYETKVFLSLPSNAASEEPIQKDIPCVKQEYKVANASLPDKISKLGGLSKEYTLLKDIISSSVNDALSSFGLRTTRGVLLHGPTGTGKTSLAQLCTHDVGVKFFPINGPEIVTQYYGESEQALHKVFDSAIEAAPAVVFIDELDAIAPARKEGGEELSQRLVATLLNMMDGISRTEGLLVIGATNRPDHIEPALRRPGRFDKEIEISVPSPKQRSDILFTLLNEMDHCLSELNIEQLAAVTHGFVGADLAALCNEAALICLRRYACFKKTNDSSSDHIAEKSVLMNGATNSIDHLDEATSSTSDMWATRRTYETMDLIHSGKEDQILKVSFEDFQEARMKIRPSAMREVILEVPKVNWEDVGGQKEVKAQLMEAVEWPQKHHDAFDRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRTLFAKARANAPSIVFFDEIDSLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEVDREEIFRIHLRKSPCGSDVSLRELALLTDGCTGADISFICREAAVAAIEESVDGSVISMEHLNMAIKQIQPSDVHSYQKLSTKFQRAVTPVI 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01568 1001 FunFam Calmodulin-interacting protein 111 586 733 - -
Viun1g01568 1001 MobiDBLite consensus disorder prediction 1 42 - -
Viun1g01568 1001 FunFam calmodulin-interacting protein 111 isoform X1 730 905 - -
Viun1g01568 1001 Gene3D - 587 720 - -
Viun1g01568 1001 Gene3D - 730 979 IPR027417 -
Viun1g01568 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 731 984 IPR027417 -
Viun1g01568 1001 ProSitePatterns AAA-protein family signature. 875 893 IPR003960 GO:0005524|GO:0016887
Viun1g01568 1001 PANTHER AAA-FAMILY ATPASE 71 994 - -
Viun1g01568 1001 FunFam Putative vesicular transport protein (CDC48) 406 584 - -
Viun1g01568 1001 Pfam ATPase family associated with various cellular activities (AAA) 455 584 IPR003959 GO:0005524|GO:0016887
Viun1g01568 1001 Pfam ATPase family associated with various cellular activities (AAA) 773 904 IPR003959 GO:0005524|GO:0016887
Viun1g01568 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 640 IPR027417 -
Viun1g01568 1001 FunFam spermatogenesis-associated protein 5-like protein 1 906 988 - -
Viun1g01568 1001 SMART AAA_5 769 907 IPR003593 GO:0016887
Viun1g01568 1001 SMART AAA_5 451 587 IPR003593 GO:0016887
Viun1g01568 1001 CDD RecA-like_CDC48_r2-like 744 903 - -
Viun1g01568 1001 Pfam AAA+ lid domain 609 640 IPR041569 -
Viun1g01568 1001 Pfam AAA+ lid domain 927 972 IPR041569 -
Viun1g01568 1001 MobiDBLite consensus disorder prediction 1 43 - -
Viun1g01568 1001 Gene3D - 906 976 - -
Viun1g01568 1001 Gene3D - 403 586 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01568 Viun-Chr1 27294289 27303942 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01568 1 997 Calmodulin-binding Proteins AT3G56690 55.136 0.0 980
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01568 - - vum:124834498 1724.91