Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01567 ATGAGGGAAGAGGATTCGAATTGGTTTTCGCGATGGGAAGAGGAGCTCCCTCCGCCAGAGGAACTCATGCCCCTATCGCAAACCCTAATCACGCCCGATCTAGCCATGGCTTTCGACATCAGAAACCCCCACACCACCACCAACCCCAACACCGCCCAACAGCATCAACACCAACAACAGCCACCGCAACAACAACAACAGCAACAACCGTCCAACCCTTCCTCGCTCCCCAACCCCCAGCAACCCACCTCCACCGAGTTTGCCGACTCCGGCGAGCTCGGCTCCGGCACCGCCGGCGAGGAGCCCGCTAGAACCCTCAAGCGCCCGCGCCTTGTGTGGACCCCGCAGCTCCATAAGCGCTTCGTCGACGCCGTCGCACACCTCGGCATAAAAAACGCCGTTCCCAAGACCATAATGCAGCTCATGAGCGTGGATGGTTTGACCCGAGAAAACGTCGCCAGCCACCTGCAGAAGTACCGTCTGTATCTCAAACGCATGCAGGGGATTTCCGCCGCCGGACCCGGTGGTCCCGGAGGCGGCGCCTCCGGCGCCGTTGCGGACCCTGCCACTGACCACCTCTTCGCCAGCTCCCCGGTGCCGGCGCATTTCCTGCACCCCGCGACGAGGCCAAATTCGGATCATTTCCTTCCCTTTGTGCCGGTGCCGGCGCTCCACCACCACCAGCAGCAACAGCAGCAGCTGGCCGCGGCGGCCCAGTACCATAGACAGGTGGGGCATTTCGGGTCGCCGCCGAACGGGCACTTCGAGAACCCGTTCATTTCTAGGCCGAATCTTCAGAGGATGGGTGGGGGTGGAGGTGGTCCCGTGCATAGCCACCACCCTGTTAGTGGGTATGTGGAGGATATGGAATCTGCTAATGCTGCCTCAGGAGGTAGAAAGGTTCTTACTCTGTTTCCGACTGGGGATGATTGA 933 0.6099 MREEDSNWFSRWEEELPPPEELMPLSQTLITPDLAMAFDIRNPHTTTNPNTAQQHQHQQQPPQQQQQQQPSNPSSLPNPQQPTSTEFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISAAGPGGPGGGASGAVADPATDHLFASSPVPAHFLHPATRPNSDHFLPFVPVPALHHHQQQQQQLAAAAQYHRQVGHFGSPPNGHFENPFISRPNLQRMGGGGGGPVHSHHPVSGYVEDMESANAASGGRKVLTLFPTGDD 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01567 310 Pfam Myb-like DNA-binding domain 112 160 IPR001005 -
Viun1g01567 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 109 161 IPR006447 GO:0003677
Viun1g01567 310 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 268 IPR044841 GO:0003700|GO:0006355
Viun1g01567 310 FunFam Two-component response regulator 104 167 - -
Viun1g01567 310 MobiDBLite consensus disorder prediction 1 107 - -
Viun1g01567 310 Gene3D - 105 167 - -
Viun1g01567 310 MobiDBLite consensus disorder prediction 41 91 - -
Viun1g01567 310 MobiDBLite consensus disorder prediction 1 18 - -
Viun1g01567 310 SUPERFAMILY Homeodomain-like 105 165 IPR009057 -
Viun1g01567 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 164 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01567 Viun-Chr1 27289877 27292625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01567 1 310 G2-like Transcription Factor Family AT3G10760 58.405 2.56e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun1g01567 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01567 - - gmx:100815363 472.241