Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01556 ATGGAAGGAGATGGTTATTGTGGGGGTTTCTTTCAGAGGTGCAAGCCTTACATAGCCATGATTTCTCTGCAATTCGGGTTTGCGGGTATGAACATAATCACTAAGGTCTCCCTCAACCGTGGGATGAGCCACTATGTGCTTGTGGTTTATAGACACGCCTTTGCTACTGCGGCTATTGCTCCTTTTGCTCTTGTTCTTGAGAGGAAAGTGAGGCCCAAGATTACATTTCTTATGTTCATGCAAATATTCGTGTTGGGTCTACTTGGGCCTGTGATTGATCAGAACTTGTACTACGCGGGGTTGAAATTCACTTCCCCGACCTACTCATGTGCAATAAGCAACATGCTCCCTGCAATGACATTTGTGATGGCTGCTATTTTCAGGATGGAAAAGGTGGACATTAGAAAACTTAGATGCCAAGCAAAAGTGATAGGAACTATAGTAACAGTTGCTGGGGCCATGTTGATGACATTGTACAAAGGTCAAGTCATCAGTTTCTTGGGTTCTCAGTACATGCATCACCCCAGAAATTATGTTCCGGAAAACACCACTGGTTCTGGGGAAAAGGATTGGTTTAAAGGCTCTATTCTTCTCATAATTGCCACTCTTGCTTGGGCTTCTTTCTTCATCCTTCAGGCAGTAACACTAAGAAAATACCCTGCTCAGCTCTCTCTCACAGCACTTGTGTGTGCCTTGGGTACACTGCAATCAATTGCAGTTACCTTTGTCATGGAGCACAGGCCATCTGTTTGGACCATTGGCTGGGATATGAACCTTCTTGCAGCAGCCTATGCTGGAATAATATCATCAGGAATCACCTACTATGTTCAAGGGATTGTCATGCAAAAGAAAGGGCCTGTTTTTGTAACTGCTTTCAGCCCTTTGATGATGATTATCGTAGCCATCATGGGTGCTTTCATCCTTGCAGAAAAAATATATCTTGGAGGGGTCACAGGAGCTGTTCTCATAGTAATGGGACTCTACGCAGTTCTGTGGGGCAAATACAAGGAGAACAAGGAGAAAGAAGCGGAGATAACCATTGAGGTGATGAAGTGTTGTTCAGAAAATGGGAGGCTGGAGACTGTGGTGGAAGATGCTGAAACAAACAACGATATTGAGATGCAAAAGGGTGAAGAAGCGTCCAGAGAGTTAAGGGTAGCCATTGTTGTTCCAAAAGTTTGA 1182 0.4425 MEGDGYCGGFFQRCKPYIAMISLQFGFAGMNIITKVSLNRGMSHYVLVVYRHAFATAAIAPFALVLERKVRPKITFLMFMQIFVLGLLGPVIDQNLYYAGLKFTSPTYSCAISNMLPAMTFVMAAIFRMEKVDIRKLRCQAKVIGTIVTVAGAMLMTLYKGQVISFLGSQYMHHPRNYVPENTTGSGEKDWFKGSILLIIATLAWASFFILQAVTLRKYPAQLSLTALVCALGTLQSIAVTFVMEHRPSVWTIGWDMNLLAAAYAGIISSGITYYVQGIVMQKKGPVFVTAFSPLMMIIVAIMGAFILAEKIYLGGVTGAVLIVMGLYAVLWGKYKENKEKEAEITIEVMKCCSENGRLETVVEDAETNNDIEMQKGEEASRELRVAIVVPKV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01556 393 Pfam EamA-like transporter family 17 157 IPR000620 GO:0016020
Viun1g01556 393 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020
Viun1g01556 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 160 - -
Viun1g01556 393 PANTHER WAT1-RELATED PROTEIN 15 341 IPR030184 GO:0016020|GO:0022857
Viun1g01556 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01556 Viun-Chr1 27095086 27097441 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01556 1 380 Nodulin-like Gene Family AT5G07050 63.377 1.26e-175 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01556 - - pvu:PHAVU_001G118300g 741.495