Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01555 ATGCCAATGGCAGTTTCTCATCAAAATCAACTGAAAACTGAAGACCCACAATTCTCTTTCAAGGAAATTGGAAATGAAGGTCTCACAAAGCGGATTCTCAGAAAAGGAGTCACTTGGCAAACTCCATTCTCTGGAGATGAAGTTGAAGTTCATTTCAAAGGACATGTTGAGAATGGAGCATCTCTTGAATCCAGTTATGATAAAGGGTCAGCGTTTCGTTTCAAATTAGGCCAGTGTGAAGTTATCCAAGGATGGGATGAAGGAGTTGCCACCATGAAGAAAGGGGAAAGAGCAATCTTCAAAATACCACCTAACTTGGCATATGGGGAAGAAGGGTCTCCTCCATTGGTTCCTCCCAATGCAACTCTCATTTATGAAATTGAAATGCTGTCTTGGAGTACCATAAGGGATTTGACTGGCGATGGAAGAATCATGAAAAAGCTAATAAGAGAGGGAGAAGGATGGGCCACTCCCAGAGAGGATGATGAGGTGCTAGTGAAATATGAAGCAAGGATGGAGAATGGGATGCTTGTCTCAAAGTCTGATGAGGGAGTGGAGTTTAATGTAAGTGATGGCTATCTATGTCCTGCTATGAGTATAGCAGTAAAGACAATGAGAAAGGGCGAAGTGGCAGAACTAGCAGTGAGATTATTTTACGGGCAGAGTCAGAATTCATATATGATCACTGAGCTAGATGCTGTTCTTCCACCAGATTCTAATTTAACTAGCATCGAGCTTGAGCTGGTGTCATGGAAAGTTGTTACAGATGTCACAGGAGACAAGAAGATAATGAAGAAGATTAAGAAAGTGGGAGAGGGGTTTGATCGTCCTAACGAGGGATCTCAAGTGAAAGTGATATATTTGTGCAAAGGGGAAGATGATACGATTATTGAGAGGAAAGGATCAGAGGAAGAACCTTTTGAGTTCACAACTCAGGAAGAACAAGTACCCGAGGGTCTAGAAAGAGCAATAATGACAATGAAAAAGGCAGAACAAGCTCTTGTAACCGTTCATGCAGAATATCTATGCGGCTATAGTAATTCACAGGGAAAGACAGCAAATAATAAAGTTCTTTATTATGAAGTTGAGTTGGTTGATTTTGTTAAGGAAAAGCCATTTTGGAAAATGGACACGCAAGAGAAAATAGAAGCTTGTGAGAGGAAGAAGCATGATGGAAATCTGCTGTTCAAAGCAGAAAATTTCATGCACGCATCTAAGAAATATGAAAAGGCTTTAAAGTACATAGAGTTTGATCACTCATTCAGTGAAGATGAGAAGCATCGTTCTAATACCTTACGTTTATCCTGCAACTTGAACAATGCTGCCTGTAAACTTAAATTGGGAGAGTACATTGAAGCTTCAAAACTTTGCACAAAGGTCCTAGAACAAGACCCTTTAAATATCAAGGCTCTCTATAGAAGATGCCAAGCATACTTGAAAACATCAGAGTTGGAGAAAGCTGAGGCTGACATTAAAAGAGCTTTGACCATTGATCCAAATAACAGAGACATTAAACTTGAGTACAAGGAGCTGAAAGTTAAGCAAAAGGAATACAATAGATATGAAGCTGGCATCTTCACCACAATGGTTTCAAGAATGAGCTAG 1605 0.4 MPMAVSHQNQLKTEDPQFSFKEIGNEGLTKRILRKGVTWQTPFSGDEVEVHFKGHVENGASLESSYDKGSAFRFKLGQCEVIQGWDEGVATMKKGERAIFKIPPNLAYGEEGSPPLVPPNATLIYEIEMLSWSTIRDLTGDGRIMKKLIREGEGWATPREDDEVLVKYEARMENGMLVSKSDEGVEFNVSDGYLCPAMSIAVKTMRKGEVAELAVRLFYGQSQNSYMITELDAVLPPDSNLTSIELELVSWKVVTDVTGDKKIMKKIKKVGEGFDRPNEGSQVKVIYLCKGEDDTIIERKGSEEEPFEFTTQEEQVPEGLERAIMTMKKAEQALVTVHAEYLCGYSNSQGKTANNKVLYYEVELVDFVKEKPFWKMDTQEKIEACERKKHDGNLLFKAENFMHASKKYEKALKYIEFDHSFSEDEKHRSNTLRLSCNLNNAACKLKLGEYIEASKLCTKVLEQDPLNIKALYRRCQAYLKTSELEKAEADIKRALTIDPNNRDIKLEYKELKVKQKEYNRYEAGIFTTMVSRMS 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01555 534 PANTHER PEPTIDYLPROLYL ISOMERASE 22 133 - -
Viun1g01555 534 SUPERFAMILY FKBP-like 251 387 - -
Viun1g01555 534 SUPERFAMILY FKBP-like 12 131 - -
Viun1g01555 534 Gene3D - 135 252 IPR046357 GO:0003755
Viun1g01555 534 SUPERFAMILY TPR-like 375 522 IPR011990 GO:0005515
Viun1g01555 534 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 161 241 IPR001179 GO:0003755
Viun1g01555 534 Gene3D - 3 134 IPR046357 GO:0003755
Viun1g01555 534 FunFam Peptidyl-prolyl cis-trans isomerase 21 133 - -
Viun1g01555 534 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 157 223 IPR001179 GO:0003755
Viun1g01555 534 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 42 130 IPR001179 GO:0003755
Viun1g01555 534 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 276 365 IPR001179 GO:0003755
Viun1g01555 534 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 280 368 IPR001179 GO:0003755
Viun1g01555 534 Pfam Tetratricopeptide repeat 469 501 IPR001440 GO:0005515
Viun1g01555 534 SMART tpr_5 385 418 IPR019734 GO:0005515
Viun1g01555 534 SMART tpr_5 468 501 IPR019734 GO:0005515
Viun1g01555 534 SMART tpr_5 434 467 IPR019734 GO:0005515
Viun1g01555 534 Gene3D - 253 370 IPR046357 GO:0003755
Viun1g01555 534 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 45 133 IPR001179 GO:0003755
Viun1g01555 534 Gene3D Tetratricopeptide repeat domain 371 527 IPR011990 GO:0005515
Viun1g01555 534 ProSiteProfiles TPR repeat profile. 468 501 IPR019734 GO:0005515
Viun1g01555 534 FunFam Peptidylprolyl isomerase 373 528 - -
Viun1g01555 534 SUPERFAMILY FKBP-like 138 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01555 Viun-Chr1 27085510 27089661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01555 22 533 Calmodulin-binding Proteins AT5G48570 53.950 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01555 - - pvu:PHAVU_001G118200g 992.645