Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01527 ATGGACCAAGGCCAGCGCCACGTCAGCGCCACCAGCGCAACTGACAATCCCGTGCTCCGCTGCACCACCGTGTGCACTCTGCCCTTCGCGCGCCTCGTCGCCGCCTCCCGCCGCCGCCTCTTCCTCTCTGACTGTGCAGACGGTCGATCCGACGACGACGACGGCGCTGAGTGCGGGTACTCGCGCGCGGTGTTGGTCCTCGACATGGTCTGGAACCTCGCCTTCGTCGTCGTGGCCGCCAGCGTCCTCCTCTCCACGCTTCGCGAGCGGCCGTCCACGCCGCTCAGACTCTGGCTCTGCGGCTACGCGTTCGAGTGCGTTCTTCATATGGCTTTCGTCTTCTTTGAGTTCCGCCTCGGAGTTCGCGATTCCTTTGGTCACACTACCTATAGCATTGTGAAGAAGCTAGAGCCCATAAACACTCTGGCATCTTCTGTTTGGTGGGTGTTTGGATTTTATTGGATTGTTGTGGGTGGCCAAGCACTTTTGGAAGATTCTCCAAGGCTCTACTGGTTAACAGTGGTCTTTCTAGCCTTTGACATATTTTTTATTATCTTTTGCATTGGGATGACATGTGTAGTTTTCTTTGCTCTCTTCTGCATCATCCCAATAATAGCACTAGCTTATGCTATGAAAATCAGAGAAGGCGCATCAGAAGAAGATATCAGGTCACTTCCTATGTATATGTTTAGTCAGTCAAATTCATTGGTGATGGTTGATGACAAGAAACAACTTGTTAACGCGAGGGTAGATTTATGCAATGGAAGCCATATGAGTGAGCTTTCTCTCAATCTAGATGATTCGGAATGCTGTATCTGCCTATGTCCATATGCTGATGGAGCAGAACTGTACCGCCTTCCTTGTACCCACCATTTTCACTGTGAATGCATTGGCCGTTGGCTTCGAACAAAAGCAACCTGCCCGCTCTGCAAATTTAATATCCTTAGAGGTGATACGTTGGTTTGA 966 0.5093 MDQGQRHVSATSATDNPVLRCTTVCTLPFARLVAASRRRLFLSDCADGRSDDDDGAECGYSRAVLVLDMVWNLAFVVVAASVLLSTLRERPSTPLRLWLCGYAFECVLHMAFVFFEFRLGVRDSFGHTTYSIVKKLEPINTLASSVWWVFGFYWIVVGGQALLEDSPRLYWLTVVFLAFDIFFIIFCIGMTCVVFFALFCIIPIIALAYAMKIREGASEEDIRSLPMYMFSQSNSLVMVDDKKQLVNARVDLCNGSHMSELSLNLDDSECCICLCPYADGAELYRLPCTHHFHCECIGRWLRTKATCPLCKFNILRGDTLV 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01527 321 SMART ring_2 270 310 IPR001841 -
Viun1g01527 321 Pfam Ring finger domain 269 311 IPR001841 -
Viun1g01527 321 SUPERFAMILY RING/U-box 263 315 - -
Viun1g01527 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 317 IPR013083 -
Viun1g01527 321 ProSiteProfiles Zinc finger RING-type profile. 270 311 IPR001841 -
Viun1g01527 321 PANTHER TARGET OF ERK KINASE MPK-1 38 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01527 Viun-Chr1 26849129 26853628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01527 52 318 C3H Transcription Factor Family AT1G68070 44.637 3.09e-83 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01527 - - gmx:100806994 561.992