Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01516 ATGGAACACCATTTTGGTCAAGACGCTGCACCTGCATCTGGGTCCTTTGATAAGACTAGGGTTTTGAACGTGAAGCCATTAAGAACACTTGTTCCTGTGTTCCCTTCACCTAATCCTGCTTCATCTTCAGCTCCACAAGGGGGTGCCCCGTTTGTCTGTGTTTCTCCTACTGGTCCTTTCCCTTCTGGGGTTGCACCCTTCTATCCATTCTTCATCTCCCCGGAGTCCCAGAGGCTCTCAGAGCAGAATGCACAAACCCACACTGGTCAGCGTGTGCCTGCTACTCCTGCTGCTCCGATATCGACGGCAGTTCCGATTAATTCATTCCGGACGCCAAGTGGAGCTACTAATGGTGATGTGGGCTCATCGAGAAGGAGTACCCGAAGTCGGGGGCAGGTCGCACAGGAAGATGGCTACGGTAATGCTGTGGTAGAGGAAGTTGAGGCAGATGCAACAACTGTGACTAAAAGATCAAAGCGCAAGTTGCAGAAGATAAAGGGACCGCAGAGTGTTGGTTCTGGGGATGTTGATCCAGATGCAGTGGCTGCTGATATTCTCAAGTCACTTAACCCATTGGTTTTCGATGTACTAAATCAACCGGAAGGTAGCAGGGAATCAGTTGCATATACACTCATGGTATATGAAGTAATGCGAAGGAAGCTTGGACAAATTGAGGATTCAAATAGGGCTGCCAACGCCGGAGCAAAACGACCTGATTTGAAGGCAGGTGCAATTATGATGAATAAAGGGATTCGGACCAACAGCAAGAAACATATTGGACCTGTGTCTGGTGTTGAGATTGGAGATATTTTCTATTTCAGATTTGAATTATGCTTAGTGGGTCTGCATTCACCTTCTATGGCTGGAATTGATTACATCGGTACCAAAACCAGTCAAGAGGAAGAGCCCTTAGCTGTAAGTATTGTCTCATCTGGAGGGTATGAAGATAATGTGGAGGATGGGGATGTGCTGATTTACAGTGGCCAAGGTGGGGTTAACCGTGACAAGGGAGCAAGTGATCAAAAGCTTGAAAGGGGTAATCTTGCTTTGGATAACAGTGCTCATAGAGGTAACGAAGTGAGGGTAATTAGGGGTTTGAAGGATATGTATCATCCAACGGGGAAGGTATATGTATATGATGGCCTTTACAAGATTCAAGATTCCTGGGTGGACAAAGCAAAATCTGGTTTCAATGTTTTCAAGTATAAATTAGGCAGGTTGCCTGGACAGCCTCCAGCATATATGATTTGGAAATCCATTCAACAATGGACTGAGAAATCTGTTTCAAGAGCTGGGGTTATATTGCCTGATCTTACTTCTGGGGCTGAAAAAGTACCTGTTTGTCTTGTGAATGATGTTGATACCGAGAAGGGCCCTGCATATTTCACTTACCTCCCAAATCTTAAGAATTTGAGGCCAACTGCTCCGCTGGAATCCACTATTGGATGTTCTTGTGTTGGTGGATGTCAACCTAACAATCCTAACTGTCCTTGTGTTCAAAAGAATGGTGGCTATCTACCATATTCTTCAGCTTCATTAATTGCAGACCTAAAATCTGTTATATATGAGTGTGGTCCTTCTTGTCAATGTCCTTCTAATTGCCGAAACCGGGTTTCTCAAGGTGGCTTGAAGTTTCGTTTGGAAGTTTATAAAACCAAGAATAAAGGATGGGCTCTTAGATCATGGGATGCTATTCGAGCAGGATCTTTCATATGTGAGTATGCTGGGGAAGTCATAGACAGTGCCAGAGTGGAGGAGGAGCTTGGTGGTGACAATCTTGATGATTACATTTTTGATTCTACTCGCATTTATCAGCAACTGGAAGTTTTTTCAGGTGACACTGAAGCTCCAAAAATCCCATCTCCCCTATATATATCAGCAATAAATGAAGGGAATGTTGCCCGGTTTATGAATCACAGCTGCTCTCCAAATGTATTATGGCGTCCAGTCATACATGAAAACAAGAATTTCTCAGATCTCCACATTGCTTTCTATGCAATTAGACATATCCCTCCTATGATGGAGTTAACTTATGATTATGGGACTGTTCTTCCTCTCAAAGCAGGTCATAGGAAAAAGAAATGCTTATGTGAATCTGTGAAATGCAGGGGTTACTTTTGTTAA 2124 0.4393 MEHHFGQDAAPASGSFDKTRVLNVKPLRTLVPVFPSPNPASSSAPQGGAPFVCVSPTGPFPSGVAPFYPFFISPESQRLSEQNAQTHTGQRVPATPAAPISTAVPINSFRTPSGATNGDVGSSRRSTRSRGQVAQEDGYGNAVVEEVEADATTVTKRSKRKLQKIKGPQSVGSGDVDPDAVAADILKSLNPLVFDVLNQPEGSRESVAYTLMVYEVMRRKLGQIEDSNRAANAGAKRPDLKAGAIMMNKGIRTNSKKHIGPVSGVEIGDIFYFRFELCLVGLHSPSMAGIDYIGTKTSQEEEPLAVSIVSSGGYEDNVEDGDVLIYSGQGGVNRDKGASDQKLERGNLALDNSAHRGNEVRVIRGLKDMYHPTGKVYVYDGLYKIQDSWVDKAKSGFNVFKYKLGRLPGQPPAYMIWKSIQQWTEKSVSRAGVILPDLTSGAEKVPVCLVNDVDTEKGPAYFTYLPNLKNLRPTAPLESTIGCSCVGGCQPNNPNCPCVQKNGGYLPYSSASLIADLKSVIYECGPSCQCPSNCRNRVSQGGLKFRLEVYKTKNKGWALRSWDAIRAGSFICEYAGEVIDSARVEEELGGDNLDDYIFDSTRIYQQLEVFSGDTEAPKIPSPLYISAINEGNVARFMNHSCSPNVLWRPVIHENKNFSDLHIAFYAIRHIPPMMELTYDYGTVLPLKAGHRKKKCLCESVKCRGYFC 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01516 707 Gene3D - 242 428 IPR036987 -
Viun1g01516 707 MobiDBLite consensus disorder prediction 78 139 - -
Viun1g01516 707 Pfam SET domain 556 681 IPR001214 GO:0005515
Viun1g01516 707 SUPERFAMILY SET domain 421 687 IPR046341 -
Viun1g01516 707 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 111 706 IPR025794 GO:0016571
Viun1g01516 707 SMART preset_2 435 529 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Viun1g01516 707 Pfam Pre-SET motif 439 537 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Viun1g01516 707 ProSiteProfiles Pre-SET domain profile. 481 542 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Viun1g01516 707 ProSiteProfiles YDG domain profile. 260 406 IPR003105 -
Viun1g01516 707 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 100 699 - -
Viun1g01516 707 SUPERFAMILY PUA domain-like 242 425 IPR015947 -
Viun1g01516 707 MobiDBLite consensus disorder prediction 101 134 - -
Viun1g01516 707 Gene3D SET domain 429 706 IPR046341 -
Viun1g01516 707 MobiDBLite consensus disorder prediction 78 92 - -
Viun1g01516 707 ProSiteProfiles SET domain profile. 545 681 IPR001214 GO:0005515
Viun1g01516 707 ProSiteProfiles Post-SET domain profile. 691 707 IPR003616 -
Viun1g01516 707 SMART set_7 545 687 IPR001214 GO:0005515
Viun1g01516 707 Pfam SAD/SRA domain 258 410 IPR003105 -
Viun1g01516 707 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 243 425 - -
Viun1g01516 707 SMART G9a_1 255 410 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01516 Viun-Chr1 26711595 26716095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01516 6 706 Su(var)3-9 homologs AT1G73100 46.961 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun1g01516 SAD_SRA 8.7e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01516 K24405 - gmx:100786650 1205.28